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Cubist Pharmaceuticals 10-Q 2011

Documents found in this filing:

  1. 10-Q
  2. Ex-10.1
  3. Ex-31.1
  4. Ex-31.2
  5. Ex-32.1
  6. Ex-32.2
  7. Ex-32.2

Table of Contents

 

 

 

UNITED STATES
SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549

 


 

FORM 10-Q

 

x

QUARTERLY REPORT UNDER SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

 

 

FOR THE QUARTERLY PERIOD ENDED SEPTEMBER 30, 2011

 

 

OR

 

 

o

TRANSITION REPORT PURSUANT TO SECTION 13 OR 15 (d) OF THE SECURITIES EXCHANGE ACT OF 1934

 

Commission file number:  0-21379

 

CUBIST PHARMACEUTICALS, INC.

(Exact Name of Registrant as Specified in its Charter)

 

Delaware

 

22-3192085

(State or Other Jurisdiction of

 

(I.R.S. Employer

Incorporation or Organization)

 

Identification No.)

 

65 Hayden Avenue, Lexington, MA 02421
(Address of Principal Executive Offices and Zip Code)

 

(781) 860-8660
(Registrant’s Telephone Number, Including Area Code)

 

Indicate by check mark whether the registrant: (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days.  Yes x  No o

 

Indicate by check mark whether the registrant has submitted electronically and posted on its corporate Web site, if any, every Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T (§232.405 of this chapter) during the preceding 12 months (or for such shorter period that the registrant was required to submit and post such files).  Yes x  No o

 

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer or a smaller reporting company. See definition of “accelerated filer,” “large accelerated filer” and “smaller reporting company” in Rule 12b-2 of the Exchange Act. (Check one):

 

Large accelerated filer x

 

Accelerated filer o

 

 

 

Non-accelerated filer o

 

Smaller reporting company o

 

Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act).  Yes o  No x

 

Number of shares of the registrant’s Common Stock, $0.001 par value, outstanding on October 20, 2011: 61,571,081.

 

 

 



Table of Contents

 

Cubist Pharmaceuticals, Inc.
Form 10-Q
For the Quarter Ended September 30, 2011

 

Table of Contents

 

Item

 

Page

 

 

 

 

PART I. Financial information

 

3

 

 

 

 

1.

Condensed Consolidated Financial Statements (Unaudited)

 

3

 

Condensed Consolidated Balance Sheets at September 30, 2011 and December 31, 2010

 

3

 

Condensed Consolidated Statements of Income for the three and nine months ended September 30, 2011 and 2010

 

4

 

Condensed Consolidated Statements of Cash Flows for the nine months ended September 30, 2011 and 2010

 

5

 

Notes to the Condensed Consolidated Financial Statements

 

6

2.

Management’s Discussion and Analysis of Financial Condition and Results of Operations

 

22

3.

Quantitative and Qualitative Disclosures About Market Risk

 

36

4.

Controls and Procedures

 

37

 

 

 

 

PART II. Other Information

 

38

 

 

 

 

1.

Legal Proceedings

 

38

1A.

Risk Factors

 

38

2.

Unregistered Sales of Equity Securities and Use of Proceeds

 

59

3.

Defaults Upon Senior Securities

 

59

4.

Removed and Reserved

 

59

5.

Other Information

 

59

6.

Exhibits

 

59

 

Signatures

 

60

 

2



Table of Contents

 

PART I. Financial Information

 

Item 1. Condensed Consolidated Financial Statements

 

CUBIST PHARMACEUTICALS, INC.

CONDENSED CONSOLIDATED BALANCE SHEETS

UNAUDITED

(in thousands, except share data)

 

 

 

September 30,

 

December 31,

 

 

 

2011

 

2010

 

ASSETS

 

 

 

 

 

Current assets:

 

 

 

 

 

Cash and cash equivalents

 

$

223,954

 

$

372,969

 

Short-term investments

 

751,229

 

516,842

 

Accounts receivable, net

 

79,863

 

61,197

 

Inventory

 

21,740

 

23,824

 

Deferred tax assets, net

 

3,575

 

16,609

 

Prepaid expenses and other current assets

 

25,859

 

24,802

 

Total current assets

 

1,106,220

 

1,016,243

 

Property and equipment, net

 

158,294

 

82,434

 

In-process research and development

 

194,000

 

194,000

 

Goodwill

 

61,459

 

61,459

 

Other intangible assets, net

 

11,947

 

13,845

 

Long-term investments

 

 

20,101

 

Other assets

 

30,858

 

27,075

 

Total assets

 

$

1,562,778

 

$

1,415,157

 

 

 

 

 

 

 

LIABILITIES AND STOCKHOLDERS’ EQUITY

 

 

 

 

 

Current liabilities:

 

 

 

 

 

Accounts payable

 

$

19,911

 

$

23,484

 

Accrued liabilities

 

93,739

 

93,527

 

Short-term deferred revenue

 

4,408

 

2,642

 

Short-term contingent consideration

 

58,739

 

30,991

 

Total current liabilities

 

176,797

 

150,644

 

Long-term deferred revenue

 

25,991

 

20,581

 

Long-term deferred tax liabilities, net

 

72,914

 

82,833

 

Long-term contingent consideration

 

72,741

 

55,506

 

Long-term debt, net

 

449,507

 

435,800

 

Other long-term liabilities

 

7,666

 

6,370

 

Total liabilities

 

805,616

 

751,734

 

Commitments and contingencies (Notes C, F, K and L)

 

 

 

 

 

Stockholders’ equity:

 

 

 

 

 

Preferred stock, non-cumulative; convertible, $.001 par value; authorized 5,000,000 shares; no shares issued and outstanding

 

 

 

Common stock, $.001 par value; authorized 150,000,000 shares; 61,478,185 and 59,344,957 shares issued and outstanding as of September 30, 2011 and December 31, 2010, respectively

 

61

 

59

 

Additional paid-in capital

 

868,630

 

800,618

 

Accumulated other comprehensive (loss) income

 

(409

)

71

 

Accumulated deficit

 

(111,120

)

(137,325

)

Total stockholders’ equity

 

757,162

 

663,423

 

Total liabilities and stockholders’ equity

 

$

1,562,778

 

$

1,415,157

 

 

The accompanying notes are an integral part of the condensed consolidated financial statements.

 

3



Table of Contents

 

CUBIST PHARMACEUTICALS, INC.

CONDENSED CONSOLIDATED STATEMENTS OF INCOME

UNAUDITED

(in thousands, except share and per share data)

 

 

 

Three Months Ended

 

Nine Months Ended

 

 

 

September 30,

 

September 30,

 

 

 

2011

 

2010

 

2011

 

2010

 

Revenues:

 

 

 

 

 

 

 

 

 

U.S. product revenues, net

 

$

186,433

 

$

154,486

 

$

508,724

 

$

444,744

 

International product revenues

 

9,778

 

6,009

 

25,825

 

18,983

 

Service revenues

 

3,020

 

 

3,020

 

8,500

 

Other revenues

 

2,467

 

1,556

 

3,498

 

2,426

 

Total revenues, net

 

201,698

 

162,051

 

541,067

 

474,653

 

 

 

 

 

 

 

 

 

 

 

Costs and expenses:

 

 

 

 

 

 

 

 

 

Cost of product revenues

 

48,380

 

37,000

 

123,933

 

105,178

 

Research and development

 

46,171

 

36,955

 

128,458

 

115,984

 

Contingent consideration

 

2,069

 

1,094

 

84,983

 

3,789

 

Selling, general and administrative

 

35,949

 

34,871

 

114,454

 

106,503

 

Total costs and expenses

 

132,569

 

109,920

 

451,828

 

331,454

 

 

 

 

 

 

 

 

 

 

 

Operating income

 

69,129

 

52,131

 

89,239

 

143,199

 

 

 

 

 

 

 

 

 

 

 

Other income (expense):

 

 

 

 

 

 

 

 

 

Interest income

 

598

 

1,068

 

2,002

 

3,655

 

Interest expense

 

(7,878

)

(5,534

)

(23,585

)

(16,379

)

Other income

 

467

 

3,788

 

1,002

 

1,345

 

Total other income (expense), net

 

(6,813

)

(678

)

(20,581

)

(11,379

)

Income before income taxes

 

62,316

 

51,453

 

68,658

 

131,820

 

Provision for income taxes

 

38,081

 

20,225

 

42,453

 

52,045

 

Net income

 

$

24,235

 

$

31,228

 

$

26,205

 

$

79,775

 

 

 

 

 

 

 

 

 

 

 

Basic net income per common share

 

$

0.40

 

$

0.53

 

$

0.43

 

$

1.36

 

Diluted net income per common share

 

$

0.33

 

$

0.50

 

$

0.41

 

$

1.29

 

 

 

 

 

 

 

 

 

 

 

Shares used in calculating:

 

 

 

 

 

 

 

 

 

Basic net income per common share

 

61,238,131

 

59,047,880

 

60,411,324

 

58,621,263

 

Diluted net income per common share

 

82,528,893

 

69,780,060

 

77,834,805

 

69,312,849

 

 

The accompanying notes are an integral part of the condensed consolidated financial statements.

 

4



Table of Contents

 

CUBIST PHARMACEUTICALS, INC.

CONDENSED CONSOLIDATED STATEMENTS OF CASH FLOWS

UNAUDITED

(in thousands)

 

 

 

Nine Months Ended September 30,

 

 

 

2011

 

2010

 

Cash flows from operating activities:

 

 

 

 

 

Net income

 

$

26,205

 

$

79,775

 

Adjustments to reconcile net income to net cash provided by operating activities:

 

 

 

 

 

Depreciation and amortization

 

8,865

 

8,707

 

Amortization and accretion of investments

 

5,359

 

4,915

 

Unrealized gain on auction rate securities

 

 

(2,309

)

Amortization of debt discount and debt issuance costs

 

15,078

 

11,316

 

Deferred income taxes

 

3,115

 

38,427

 

Foreign exchange (gain) loss

 

(490

)

1,148

 

Stock-based compensation

 

13,970

 

11,938

 

Contingent consideration expense

 

84,983

 

3,789

 

Payment of contingent consideration

 

(23,209

)

 

Charge for company 401(k) common stock match

 

2,930

 

2,699

 

Inventory write-off

 

4,692

 

 

Changes in assets and liabilities:

 

 

 

 

 

Accounts receivable

 

(18,666

)

(3,477

)

Inventory

 

(2,528

)

(217

)

Prepaid expenses and other current assets

 

(1,057

)

(25,511

)

Other assets

 

(5,148

)

(5,441

)

Accounts payable and accrued liabilities

 

2,575

 

(23,105

)

Deferred revenue and other long-term liabilities

 

11,975

 

8,536

 

Total adjustments

 

102,444

 

31,415

 

Net cash provided by operating activities

 

128,649

 

111,190

 

Cash flows from investing activities:

 

 

 

 

 

Purchases of property and equipment

 

(89,938

)

(11,837

)

Purchases of investments

 

(1,099,130

)

(414,897

)

Proceeds from investments

 

879,006

 

316,237

 

Net cash used in investing activities

 

(310,062

)

(110,497

)

Cash flows from financing activities:

 

 

 

 

 

Payment of contingent consideration

 

(16,791

)

(20,000

)

Issuance of common stock, net

 

35,465

 

13,777

 

Excess tax benefit on stock-based awards

 

13,234

 

19,295

 

Net cash provided by financing activities

 

31,908

 

13,072

 

Net (decrease) increase in cash and cash equivalents

 

(149,505

)

13,765

 

Effect of changes in foreign exchange rates on cash balances

 

490

 

971

 

Cash and cash equivalents at beginning of period

 

372,969

 

157,316

 

Cash and cash equivalents at end of period

 

$

223,954

 

$

172,052

 

 

The accompanying notes are an integral part of the condensed consolidated financial statements.

 

5



Table of Contents

 

CUBIST PHARMACEUTICALS, INC.

NOTES TO THE CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

UNAUDITED

 

A.            BASIS OF PRESENTATION AND ACCOUNTING POLICIES

 

Basis of Presentation and Consolidation

 

The accompanying condensed consolidated financial statements are unaudited and have been prepared by Cubist Pharmaceuticals, Inc. (“Cubist” or the “Company”) in accordance with accounting principles generally accepted in the United States of America, or GAAP, and pursuant to the instructions to Form 10-Q and Article 10 of Regulation S-X. Certain information and footnote disclosures normally included in the Company’s annual consolidated financial statements have been condensed or omitted. The condensed consolidated financial statements, in the opinion of management, reflect all normal and recurring adjustments necessary for a fair statement of the Company’s financial position and results of operations.

 

The year-end condensed balance sheet data was derived from audited financial statements, but does not include all disclosures required by GAAP. The results of operations for the interim periods are not necessarily indicative of the results of operations to be expected for any future period or the entire fiscal year. These interim condensed consolidated financial statements should be read in conjunction with the audited consolidated financial statements for the year ended December 31, 2010, which are contained in Cubist’s Annual Report on Form 10-K filed with the Securities and Exchange Commission, or SEC, on February 23, 2011.

 

The accompanying condensed consolidated financial statements include the accounts of Cubist and its wholly-owned subsidiaries. All intercompany balances and transactions have been eliminated in consolidation.

 

Use of Estimates

 

The preparation of financial statements in conformity with GAAP requires the use of estimates and assumptions that affect the reported amounts of assets and liabilities and disclosure of contingent assets and contingent liabilities at the date of the financial statements and the reported amounts of revenues and expenses during the reporting period. The most significant assumptions are employed in estimates used in determining values of: inventories; investments; impairment of long-lived assets, including goodwill, in-process research and development, or IPR&D, and other intangible assets; accrued clinical research costs; contingent consideration; income taxes; accounting for stock-based compensation; product rebates, chargeback and return accruals; as well as in estimates used in accounting for contingencies and revenue recognition. Actual results could differ from estimated amounts.

 

Fair Value Measurements

 

The carrying amounts of Cubist’s cash and cash equivalents, accounts receivable, accounts payable, and accrued expenses approximate their fair value due to the short-term nature of these amounts. Investments are considered available-for-sale as of September 30, 2011 and December 31, 2010, and are carried at fair value. In connection with its acquisition of Calixa Therapeutics Inc., or Calixa, in December 2009, the Company recorded contingent consideration relating to potential amounts payable to Calixa’s former stockholders upon the achievement of certain development, regulatory and sales milestones. This contingent consideration liability is recognized at its estimated fair value.

 

In evaluating the fair value information, considerable judgment is required to interpret the market data used to develop the estimates. The use of different market assumptions and/or different valuation techniques may have a material effect on the estimated fair value amounts. Accordingly, the estimates of fair value presented herein may not be indicative of the amounts that could be realized in a current market exchange. See Note C., “Fair Value Measurements,” for additional information.

 

Investments

 

Short-term investments include bank deposits, corporate and municipal notes, United States, or U.S., treasury securities and U.S. government agency securities. Long-term investments include corporate notes, U.S. treasury securities and U.S. government agency securities. See Note B., “Investments,” for additional information.

 

Unrealized gains and temporary losses on investments are included in accumulated other comprehensive income (loss) as a separate component of stockholders’ equity. Realized gains and losses, dividends, interest income, and declines in value judged to be

 

6



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other-than-temporary credit losses are included in other income (expense). Amortization of any premium or discount arising at purchase is included in interest income.

 

Concentration of Risk

 

Financial instruments, which potentially subject the Company to concentrations of credit risk, consist principally of cash and cash equivalents, investments and accounts receivable. The Company’s cash and cash equivalents are held primarily with five financial institutions in the U.S. Investments are restricted, in accordance with the Company’s investment policy, to a concentration limit per institution.

 

Cubist’s accounts receivable at September 30, 2011 and December 31, 2010, primarily represent amounts due to the Company from wholesalers, including AmerisourceBergen Drug Corporation, Cardinal Health, Inc. and McKesson Corporation, as well as from Cubist’s international partners for CUBICIN® (daptomycin for injection). Cubist performs ongoing credit evaluations of its key wholesalers, distributors and other customers and generally does not require collateral. For the three and nine months ended September 30, 2011 and 2010, Cubist did not have any significant write-offs of accounts receivable, and its days sales outstanding has not significantly changed since December 31, 2010.

 

 

 

Percentage of Total Accounts Receivable, Net as of

 

 

 

September 30,

 

December 31,

 

 

 

2011

 

2010

 

AmerisourceBergen Drug Corporation

 

21%

 

26%

 

Cardinal Health, Inc.

 

23%

 

24%

 

McKesson Corporation

 

18%

 

19%

 

 

 

 

Percentage of Total
Net Revenues for
the Three Months Ended
September 30,

 

Percentage of Total
Net Revenues for
the Nine Months Ended
September 30,

 

 

 

2011

 

2010

 

2011

 

2010

 

AmerisourceBergen Drug Corporation

 

20%

 

25%

 

22%

 

26%

 

Cardinal Health, Inc.

 

20%

 

23%

 

21%

 

22%

 

McKesson Corporation

 

17%

 

18%

 

17%

 

17%

 

 

Acquired In-process Research and Development

 

IPR&D acquired in a business combination is capitalized on the Company’s condensed consolidated balance sheets at its acquisition-date fair value. Until the underlying project is completed, IPR&D is accounted for as indefinite-lived intangible assets. Once the project is completed, the carrying value of the IPR&D is amortized over the estimated useful life of the asset. If a project becomes impaired or is abandoned, the carrying value of the IPR&D is written down to its revised fair value with the related impairment charge recognized in the period in which the impairment occurs. IPR&D is tested for impairment on an annual basis, or more frequently if an indicator of impairment is present, using a projected discounted cash flow model. The valuation techniques utilized in performing impairment tests incorporate significant assumptions and judgments to estimate the fair value. The use of different valuation techniques or different assumptions could result in materially different fair value estimates.

 

On December 16, 2009, Cubist acquired 100% of the outstanding stock of Calixa for an upfront cash payment of $99.2 million, as adjusted, and contingent consideration with an estimated acquisition-date fair value of $101.6 million, upon which Calixa became a wholly-owned subsidiary of Cubist. Calixa’s lead compound, CXA-201, is an intravenously-administered combination of a novel anti-pseudomonal cephalosporin, CXA-101, and the beta-lactamase inhibitor tazobactam. The transaction was accounted for as a business combination using the acquisition method. Accordingly, the tangible assets and identifiable intangible assets acquired and liabilities assumed were recorded at fair value, with the remaining purchase price recorded as goodwill. Of the identifiable assets acquired, $194.0 million are IPR&D assets relating to CXA-201. The fair value of the IPR&D acquired was determined using an income method approach, including discounted cash flow models that are probability-adjusted for assumptions the Company believes a market participant would make relating to the development and potential commercialization of CXA-201. CXA-201 as a potential treatment for pneumonia had an estimated fair value of $174.0 million and CXA-201 as a potential treatment for complicated urinary tract infections, or cUTI, and complicated intra-abdominal infections, or cIAI, had an estimated fair value of $20.0 million as of the acquisition date. Cubist has not recorded any impairment charges related to the IPR&D since the acquisition of the assets.

 

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If the Company experiences unfavorable data from any ongoing or future clinical trial, changes in assumptions that negatively impact projected cash flows, or because of any other information regarding the prospects of successfully developing or commercializing CXA-201 for any of these indications, then the fair value of CXA-201 would be potentially impaired and the Company would incur significant charges in the period in which the impairment occurs.

 

Revenue Recognition

 

Cubist’s principal sources of revenue are: (i) sales of CUBICIN in the U.S.; (ii) revenues derived from sales of CUBICIN by Cubist’s international distribution partners; (iii) license fees and milestone payments that are derived from collaboration, license and commercialization agreements with other biopharmaceutical companies; and (iv) service revenues derived from its co-promotion agreement with Optimer Pharmaceuticals, Inc., or Optimer, to co-promote DIFICIDTM in the U.S. In all instances, revenue is recognized only when the price is fixed or determinable, persuasive evidence of an arrangement exists, delivery has occurred or services have been rendered, collectibility of the resulting receivable is reasonably assured and the Company has no further performance obligations.

 

U.S. Product Revenues, net

 

All U.S. product revenues are recognized upon delivery. All revenues from product sales are recorded net of applicable provisions for estimated returns, chargebacks, rebates, wholesaler management fees and discounts in the same period the related sales are recorded.

 

Certain product sales qualify for rebates or discounts from standard list pricing due to government-sponsored programs or other contractual agreements. Reserves for Medicaid rebates and coverage gap discount program rebates are included in accrued liabilities and were $12.8 million at September 30, 2011. Reserves for Medicaid rebates included in accrued liabilities were $6.3 million at December 31, 2010. The increase in the reserve at September 30, 2011, is a result of delayed billing for rebate claims by state authorities. Reserves for returns, discounts, chargebacks, and wholesaler management fees are offset against accounts receivable and were $6.3 million and $6.0 million at September 30, 2011 and December 31, 2010, respectively.

 

In the three and nine months ended September 30, 2011, provisions for sales returns, chargebacks, Medicaid rebates, coverage gap discount program rebates, wholesaler management fees and discounts that were offset against gross U.S. product revenues totaled $26.7 million and $71.7 million, respectively. In the three and nine months ended September 30, 2010, provisions for sales returns, chargebacks, Medicaid rebates, wholesaler management fees and discounts that were offset against gross U.S. product revenues totaled $19.3 million and $48.2 million, respectively. The increase in the amount of these provisions is primarily due to increases in pricing discounts, chargebacks and Medicaid reserves due to the 6.9% price increases in April 2010 and January 2011 and the 5.5% price increase in July 2011 and an increase in the number of vials sold of CUBICIN in the U.S. In addition, contractual rebates increased as a result of U.S. health care reform legislation enacted in March 2010, which increased the Medicaid rebate rate from 15.1% to 23.1%, the number of individuals eligible to participate in the Medicaid program and the amount of discounts from the coverage gap discount program.

 

International Product Revenues

 

Cubist sells its product to international CUBICIN distribution partners based upon a transfer price arrangement that is generally established annually. Once Cubist’s distribution partner sells the product to a third party, Cubist may be owed an additional payment or royalty based on a percentage of the net selling price to the third party, less the initial transfer price previously paid on such product. Under no circumstances would the subsequent adjustment result in a refund to the distribution partner of the initial transfer price. Cubist recognizes the additional revenue upon receipt of royalty statements from its distribution partners.

 

Service Revenues

 

From July 2008 through June 2010, Cubist promoted and provided other support for MERREM® I.V. in the U.S. under a commercial services agreement with AstraZeneca Pharmaceuticals, LP, an indirect wholly-owned subsidiary of AstraZeneca PLC, or AstraZeneca. AstraZeneca provided marketing and commercial support for MERREM I.V. The agreement with AstraZeneca, as amended, expired in accordance with its terms on June 30, 2010. Service revenues relating to MERREM I.V. for the nine months ended September 30, 2010, were $8.5 million.

 

On April 5, 2011, the Company entered into a co-promotion agreement with Optimer pursuant to which Optimer engaged Cubist as its exclusive partner for the promotion of DIFICID in the U.S. DIFICID was approved by the U.S. Food and Drug Administration, or FDA, in May 2011 for the treatment of Clostridium difficile-associated diarrhea. Under the terms of the co-promotion agreement, Optimer and Cubist will co-promote DIFICID to physicians, hospitals, long-term care facilities and other health

 

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care institutions, participate on joint committees and jointly provide medical affairs support for DIFICID. In addition, Optimer will be responsible for the sale and distribution of DIFICID in the U.S. The initial term of the co-promotion agreement is approximately two years from the date of first commercial sale of DIFICID in the U.S., which occurred in July 2011. Optimer paid the Company a quarterly fee of $3.8 million in June 2011, of which $3.0 million was recognized as service revenue during the three and nine months ended September 30, 2011, and will pay the Company quarterly payments of $3.8 million, or $30.0 million in the aggregate, during the term of the agreement. The Company assessed the co-promotion agreement under the accounting guidance on revenue recognition for multiple-element arrangements. The deliverables under the co-promotion agreement with Optimer include co-promotion of DIFICID, participation in joint committees and providing medical affairs support for DIFICID. Each identified deliverable within the arrangement was determined to be a separate unit of accounting, and the performance period of each deliverable was deemed to be the term of the co-promotion agreement. There are no performance obligations extending beyond the term of the arrangement. As a result, the Company will recognize the service fees ratably over the performance period ending July 31, 2013.

 

Cubist is also eligible to receive: (a) an additional $5.0 million in the first year after first commercial sale and $12.5 million in the second year after first commercial sale if mutually agreed-upon annual sales targets are achieved; and (b) a portion of Optimer’s gross profits derived from net sales above the specified annual targets, if any. The co-promotion agreement may be renewed by mutual agreement of the parties for additional, consecutive one-year terms. Each of Optimer and Cubist may terminate the co-promotion agreement prior to expiration upon the uncured material breach of the co-promotion agreement by the other party, upon the bankruptcy or insolvency of the other party, or in the event that actual net sales during the first year of commercial sales of DIFICID in the U.S. are below specified levels, subject to certain limitations. Optimer may terminate the co-promotion agreement, subject to certain limitations, if (i) Optimer withdraws DIFICID from the market in the U.S., (ii) Cubist fails to comply with applicable laws in performing its obligations, (iii) Cubist undergoes a change of control, (iv) certain market events occur related to CUBICIN in the U.S., or (v) Cubist undertakes certain restructuring activities with respect to its sales force. Cubist may terminate the co-promotion agreement, subject to certain limitations, if (i) Optimer experiences certain supply failures in relation to the demand for DIFICID in the U.S., (ii) Optimer is acquired by certain types of entities, including competitors of Cubist, (iii) certain market events occur related to CUBICIN in the U.S., or (iv) Optimer fails to comply with applicable laws in performing its obligations.

 

Other Revenues

 

Other revenues include revenues related to upfront license payments, license fees and milestone payments received through Cubist’s license, collaboration and commercialization agreements. The Company analyzes its multiple-deliverable arrangements to determine whether the elements can be separated and accounted for individually as separate units of accounting.

 

Multiple-Element Arrangements

 

On January 1, 2011, the Company adopted new authoritative guidance on revenue recognition for multiple-element arrangements. The guidance, which applies to multiple-element arrangements entered into or materially modified on or after January 1, 2011, amends the criteria for separating and allocating consideration in a multiple-element arrangement by modifying the fair value requirements for revenue recognition and eliminating the use of the residual method. The fair value of deliverables under the arrangement may be derived using a “best estimate of selling price” if vendor-specific objective evidence and third-party evidence is not available. Deliverables under the arrangement will be separate units of accounting, provided (i) a delivered item has value to the customer on a standalone basis; and (ii) if the arrangement includes a general right of return relative to the delivered item, delivery or performance of the undelivered item is considered probable and substantially in the control of the Company. The Company entered into the co-promotion agreement with Optimer in April 2011, which was evaluated under the accounting guidance on revenue recognition for multiple-element arrangements, as noted above. Cubist’s other existing license and collaboration agreements continue to be accounted for under previously-issued revenue recognition guidance for multiple-element arrangements.

 

Milestones

 

On January 1, 2011, the Company adopted new authoritative guidance on revenue recognition for milestone payments related to arrangements under which the Company has continuing performance obligations. Consideration for events that meet the definition of a milestone in accordance with the accounting guidance for the milestone method of revenue recognition is recognized as revenue in its entirety in the period in which the milestone is achieved only if all of the following conditions are met: (i) the milestone is commensurate with either the Company’s performance to achieve the milestone or the enhancement of the value of the delivered item as a result of a specific outcome resulting from the Company’s performance to achieve the milestone; (ii) the consideration relates solely to past performance; and (iii) the amount of the milestone consideration is reasonable relative to all of the deliverables and payment terms, including other potential milestone consideration, within the arrangement. Otherwise, the milestone payments are not considered to be substantive and are therefore deferred and recognized as revenue over the term of the arrangement as the Company completes its performance obligations. The adoption of this guidance does not materially change the Company’s previous method of recognizing milestone payments. All potential future milestones under existing arrangements with licensing partners, as specified

 

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below, and any new arrangements with milestones, will be evaluated under the new revenue recognition guidance for milestone payments.

 

In March 2007, Cubist entered into a license agreement with Merck & Co., Inc., or Merck, for the development and commercialization of CUBICIN in Japan. On July 1, 2011, Merck received regulatory approval of CUBICIN in Japan, which triggered a $6.0 million milestone payment to Cubist. The milestone was assessed under the accounting guidance for the milestone method of revenue recognition and was not deemed to be substantive and, therefore, approximately $1.9 million was recognized as other revenue during the three months ended September 30, 2011. The remainder of the milestone payment will be amortized to other revenues over the performance period ending January 2021. Cubist may receive up to $32.5 million in additional payments upon Merck achieving certain sales milestones. Merck commenced the commercial launch of CUBICIN in September 2011 through its wholly-owned subsidiary, MSD Japan.

 

In December 2006, Cubist entered into a license agreement with AstraZeneca AB for the development and commercialization of CUBICIN in China and certain other countries in Asia (excluding Japan, Taiwan and Korea), the Middle East and Africa that had not been covered by previously-existing CUBICIN international partnering agreements. Cubist may receive payments of up to $4.5 million and $14.0 million upon AstraZeneca AB achieving certain regulatory and sales milestones, respectively.

 

Basic and Diluted Net Income Per Share

 

Basic net income per common share has been computed by dividing net income by the weighted average number of shares outstanding during the period. Diluted net income per share has been computed by dividing diluted net income by the diluted number of shares outstanding during the period. Except where the result would be antidilutive to income from continuing operations, diluted net income per share has been computed assuming the conversion of convertible obligations and the elimination of the interest expense related to the Company’s 2.25% convertible subordinated notes, or 2.25% Notes, and 2.50% convertible senior notes, or 2.50% Notes, the exercise of stock options, and the vesting of restricted stock units, or RSUs, as well as their related income tax effects.

 

The following table sets forth the computation of basic and diluted net income per common share (amounts in thousands, except share and per share amounts):

 

 

 

Three Months Ended
September 30,

 

Nine Months Ended
September 30,

 

 

 

2011

 

2010

 

2011

 

2010

 

Net income, basic

 

$

24,235

 

$

31,228

 

$

26,205

 

$

79,775

 

Effect of dilutive securities:

 

 

 

 

 

 

 

 

 

Interest on 2.50% Notes, net of tax

 

772

 

 

2,368

 

 

Debt issuance costs related to 2.50% Notes, net of tax

 

125

 

 

374

 

 

Debt discount amortization related to 2.50% Notes, net of tax

 

1,091

 

 

3,219

 

 

Interest on 2.25% Notes, net of tax

 

157

 

1,022

 

 

3,020

 

Debt issuance costs related to 2.25% Notes, net of tax

 

28

 

136

 

 

402

 

Debt discount amortization related to 2.25% Notes, net of tax

 

471

 

2,194

 

 

6,348

 

Net income, diluted

 

$

26,879

 

$

34,580

 

$

32,166

 

$

89,545

 

 

 

 

 

 

 

 

 

 

 

Shares used in calculating basic net income per common share

 

61,238,131

 

59,047,880

 

60,411,324

 

58,621,263

 

Effect of dilutive securities:

 

 

 

 

 

 

 

 

 

Options to purchase shares of common stock and RSUs

 

2,317,230

 

982,750

 

1,999,326

 

942,156

 

2.50% Notes convertible into shares of common stock

 

15,424,155

 

 

15,424,155

 

 

2.25% Notes convertible into shares of common stock

 

3,549,377

 

9,749,430

 

 

9,749,430

 

Shares used in calculating diluted net income per common share

 

82,528,893

 

69,780,060

 

77,834,805

 

69,312,849

 

 

 

 

 

 

 

 

 

 

 

Net income per share, basic

 

$

0.40

 

$

0.53

 

$

0.43

 

$

1.36

 

Net income per share, diluted

 

$

0.33

 

$

0.50

 

$

0.41

 

$

1.29

 

 

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Potential common shares excluded from the calculation of diluted net income per share, as their inclusion would have been antidilutive, were:

 

 

 

Three Months Ended
September 30,

 

Nine Months Ended
September 30,

 

 

 

2011

 

2010

 

2011

 

2010

 

 

 

 

 

 

 

 

 

 

 

Options to purchase shares of common stock and RSUs

 

1,849,813

 

3,920,284

 

2,040,507

 

3,872,697

 

2.25% Notes convertible into shares of common stock

 

 

 

3,549,377

 

 

 

Comprehensive Income

 

During the three and nine months ended September 30, 2011 and 2010, comprehensive income included the Company’s net income as well as increases in unrealized gains and losses on the Company’s available-for-sale securities.

 

The following table summarizes the components of comprehensive income:

 

 

 

 

Three Months Ended
September 30,

 

Nine Months Ended
September 30,

 

 

 

2011

 

2010

 

2011

 

2010

 

 

 

(in thousands)

 

(in thousands)

 

Net income

 

$

24,235

 

$

31,228

 

$

26,205

 

$

79,775

 

Increase in unrealized loss on auction rate securities

 

 

 

 

(237

)

Other unrealized investment (losses) gains

 

(333

)

548

 

(480

)

510

 

Total comprehensive income

 

$

23,902

 

$

31,776

 

$

25,725

 

$

80,048

 

 

Subsequent Events

 

Cubist considers events or transactions that have occurred after the balance sheet date of September 30, 2011, but prior to the filing of the financial statements with the SEC on this Form 10-Q to provide additional evidence relative to certain estimates or to identify matters that require additional recognition or disclosure. Subsequent events have been evaluated through the date of the filing with the SEC of this Quarterly Report on Form 10-Q. On October 24, 2011, Cubist entered into an Agreement and Plan of Merger, or Merger Agreement, to acquire all of the outstanding shares of Adolor Corporation, or Adolor, which occurred after September 30, 2011, and is considered a nonrecognizable subsequent event. See Note M., “Subsequent Event,” for additional information.

 

Recent Accounting Pronouncements

 

In September 2011, the Financial Accounting Standards Board, or FASB, issued amended accounting guidance for goodwill in order to simplify how companies test goodwill for impairment. The amendments permit a company to first assess the qualitative factors to determine whether it is more likely than not that the fair value of the reporting unit is less than its carrying amount as a basis for determining whether it is necessary to perform the two-step goodwill impairment test. The more-likely-than-not threshold is defined as having a likelihood of more than 50 percent. If, after assessing the totality of events or circumstances, a company determines it is not more likely than not that the fair value of a reporting unit is less than its carrying amount, then performing the two-step impairment test is not required. The amendments are effective for annual and interim goodwill impairment tests performed for fiscal years beginning after December 15, 2011. Early adoption is permitted, including for annual and interim goodwill impairment tests performed as of a date before September 15, 2011, if a company’s financial statements for the most recent annual or interim period have not yet been issued. The Company does not expect the adoption to have any impact on its consolidated financial statements.

 

In June 2011, the FASB issued an amendment to the accounting guidance for presentation of comprehensive income. Under the amended guidance, a company may present the total of comprehensive income, the components of net income, and the components of other comprehensive income either in a single continuous statement of comprehensive income or in two separate but consecutive statements. In either case, a company is required to present each component of net income along with total net income, each component of other comprehensive income along with a total for other comprehensive income, and a total amount for comprehensive income. Regardless of choice in presentation, a company is required to present on the face of the financial statements reclassification adjustments for items that are reclassified from other comprehensive income to net income in the statement(s) where the components of net income and the components of other comprehensive income are presented. For public companies, the amendment is effective for fiscal years, and interim periods within those years, beginning after December 15, 2011, and shall be applied retrospectively. Early adoption is permitted. Other than a change in presentation, the adoption of this update is not expected to have a material impact on the Company’s consolidated financial statements.

 

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In May 2011, the FASB amended the accounting guidance for fair value to develop common requirements between GAAP and International Financial Reporting Standards. The amendments clarify the FASB’s intent about the application of existing fair value measurement and disclosure requirements and in some instances change a particular principle or requirement for measuring fair value or for disclosing information about fair value measurements. Notable changes under the amended guidance include: (i) application of the highest and best use and valuation premise concepts solely for non-financial assets and liabilities; (ii) measuring the fair value of an instrument classified in a reporting entity’s shareholders’ equity; and (iii) disclosing quantitative information about unobservable inputs used in the fair value measurement within Level 3 of the fair value hierarchy. For public entities, the amendment is effective for interim and annual periods beginning after December 15, 2011. Early application is not permitted. The Company is currently evaluating the impact of these amendments on its financial statements and related disclosures.

 

B.            INVESTMENTS

 

The following table summarizes the amortized cost and estimated fair values of the Company’s available-for-sale investments:

 

 

 

Amortized

 

Unrealized

 

Unrealized

 

Fair

 

 

 

Cost

 

Gains

 

Losses

 

Value

 

 

 

(in thousands)

 

Balance at September 30, 2011:

 

 

 

 

 

 

 

 

 

Bank deposits

 

$

81,008

 

$

 

$

 

$

81,008

 

U.S. treasury securities

 

102,146

 

68

 

(1

)

102,213

 

Federal agencies

 

51,549

 

 

(6

)

51,543

 

Corporate and municipal notes

 

446,874

 

4

 

(468

)

446,410

 

Total

 

$

681,577

 

$

72

 

$

(475

)

$

681,174

 

 

 

 

 

 

 

 

 

 

 

Balance at December 31, 2010:

 

 

 

 

 

 

 

 

 

Bank deposits

 

$

10,000

 

$

 

$

 

$

10,000

 

U.S. treasury securities

 

110,513

 

106

 

(6

)

110,613

 

Federal agencies

 

47,149

 

7

 

(2

)

47,154

 

Corporate notes

 

339,200

 

162

 

(186

)

339,176

 

Total

 

$

506,862

 

$

275

 

$

(194

)

$

506,943

 

 

The following table contains information regarding the range of contractual maturities of the Company’s short-term and long-term investments (in thousands):

 

 

 

September 30, 2011

 

December 31, 2010

 

 

 

Amortized

 

Fair

 

Amortized

 

Fair

 

 

 

Cost

 

Value

 

Cost

 

Value

 

Within 1 year

 

$

681,577

 

$

681,174

 

$

486,819

 

$

486,842

 

1-2 years

 

 

 

20,043

 

20,101

 

Total

 

$

681,577

 

$

681,174

 

$

506,862

 

$

506,943

 

 

Certain short-term debt securities with original maturities of less than 90 days are included in cash and cash equivalents on the condensed consolidated balance sheets and are not included in the tables above. In addition, certain bank deposits with original maturities of more than 90 days are not considered available-for-sale securities and are not included in the tables above. See Note A., “Basis of Presentation and Accounting Policies,” and Note C., “Fair Value Measurements,” for additional information.

 

C.            FAIR VALUE MEASUREMENTS

 

The accounting standard for fair value measurements defines fair value, establishes a framework for measuring fair value in accordance with GAAP, and requires detailed disclosures about fair value measurements. Under this standard, fair value is the price that would be received to sell an asset or paid to transfer a liability in an orderly transaction between market participants at the measurement date. The valuation techniques are based on observable and unobservable inputs. Observable inputs reflect readily

 

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obtainable data from independent sources, while unobservable inputs reflect certain market assumptions. This standard classifies these inputs into the following hierarchy:

 

Level 1 Inputs—Quoted prices for identical instruments in active markets.

 

Level 2 Inputs—Quoted prices for similar instruments in active markets; quoted prices for identical or similar instruments in markets that are not active; and model-derived valuations whose inputs are observable or whose significant value drivers are observable.

 

Level 3 Inputs—Instruments with primarily unobservable value drivers.

 

There were no transfers between fair value measurement levels 1 and 2 during the three and nine months ended September 30, 2011.

 

The Company’s financial assets and liabilities that are measured at fair value on a recurring basis as of September 30, 2011 and December 31, 2010, are classified in the table below into one of the three categories described above:

 

 

 

September 30, 2011

 

 

 

Fair Value Measurements Using

 

 

 

 

 

Level 1

 

Level 2

 

Level 3

 

Total

 

 

 

(in thousands)

 

Assets

 

 

 

 

 

 

 

 

 

Bank deposits

 

$

 

$

81,008

 

$

 

$

81,008

 

U.S. treasury securities

 

102,213

 

 

 

102,213

 

Federal agencies

 

51,543

 

 

 

51,543

 

Corporate and municipal notes

 

 

480,858

 

 

480,858

 

Total assets

 

$

153,756

 

$

561,866

 

$

 

$

715,622

 

Liabilities

 

 

 

 

 

 

 

 

 

Contingent consideration

 

$

 

$

 

$

131,480

 

$

131,480

 

Total liabilities

 

$

 

$

 

$

131,480

 

$

131,480

 

 

 

 

December 31, 2010

 

 

 

Fair Value Measurements Using

 

 

 

 

 

Level 1

 

Level 2

 

Level 3

 

Total

 

 

 

(in thousands)

 

Assets

 

 

 

 

 

 

 

 

 

Bank deposits

 

$

 

$

10,000

 

$

 

$

10,000

 

U.S. treasury securities

 

150,111

 

 

 

150,111

 

Federal agencies

 

47,154

 

 

 

47,154

 

Corporate notes

 

 

391,027

 

 

391,027

 

Total assets

 

$

197,265

 

$

401,027

 

$

 

$

598,292

 

Liabilities

 

 

 

 

 

 

 

 

 

Contingent consideration

 

$

 

$

 

$

86,497

 

$

86,497

 

Total liabilities

 

$

 

$

 

$

86,497

 

$

86,497

 

 

The Company revised its fair value table as of December 31, 2010, to remove approximately $146.2 million of bank deposits classified as cash and cash equivalents that are not subject to the accounting guidance for fair value measurements. This revision had no impact on Cubist’s results of operations or financial condition as of September 30, 2011 and December 30, 2010.

 

Marketable Securities

 

The Company classifies its bank deposits and corporate and municipal notes as Level 2 under the fair value hierarchy. These assets have been valued by a third-party pricing service at each balance sheet date, using observable market inputs that may include trade information, broker or dealer quotes, bids, offers, or a combination of these data sources. The fair value hierarchy level is determined by asset class based on the lowest level of significant input.

 

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Level 3 Roll-forward

 

The table below provides a reconciliation of fair value for which the Company used Level 3 inputs:

 

 

 

Contingent
Consideration

 

 

 

(in thousands)

 

Balance at December 31, 2010

 

$

86,497

 

Contingent consideration expense

 

84,983

 

Contingent consideration payment

 

(40,000

)

Balance at September 30, 2011

 

$

131,480

 

 

Contingent Consideration

 

Contingent consideration relates to potential amounts payable by the Company to the former stockholders of Calixa upon the achievement of certain development, regulatory and sales milestones with respect to CXA-201 in connection with the Company’s acquisition of Calixa. As of September 30, 2011 and December 31, 2010, the fair value of the contingent consideration liability was estimated to be $131.5 million and $86.5 million, respectively, and was determined based on a probability-weighted income approach. This valuation takes into account various assumptions, including the probabilities associated with successfully completing clinical trials, obtaining regulatory approval, the commercial success of the product and the period in which these milestones are achieved, as well as a discount rate of 5.25%, which represents a pre-tax working capital rate. This valuation was developed using assumptions the Company believes would be made by a market participant. The Company assesses these estimates on an on-going basis as additional data impacting the assumptions is obtained.

 

First patient enrollment in Phase 3 clinical trials for cUTI occurred in July 2011 and triggered a $40.0 million milestone payment, which Cubist paid to Calixa’s former stockholders during the three months ended September 30, 2011. Cubist may be required to make up to an additional $250.0 million of undiscounted payments to the former stockholders of Calixa, including a milestone payment of $30.0 million related to first patient enrollment in a Phase 3 clinical trial for cIAI, which is expected to be achieved in the fourth quarter of 2011. The decrease of $37.9 million in the fair value of the contingent consideration liability during the three months ended September 30, 2011, is the result of the $40.0 million milestone payment discussed above, partially offset by $2.1 million of contingent consideration expense recorded primarily as a result of the time value of money. The increase of $45.0 million in the fair value of the contingent consideration liability during the nine months ended September 30, 2011, is primarily the result of an increase in the probabilities of success of certain milestones during the second quarter of 2011, partially offset by the $40.0 million milestone payment. The probability of achieving the first patient enrollment milestone for the Phase 3 clinical trial for cUTI was increased to 100% as a result of the commencement of the trial, and the probability of achieving the first patient enrollment milestone for cIAI was increased to approximately 100%. The probabilities of success for subsequent associated milestones used in estimating fair value were also increased as a result of receiving positive top-line results from the Phase 2 clinical trial of CXA-201 as a potential treatment for cIAI. In addition, the probability of enrollment in a Phase 3 clinical trial of CXA-201 as a potential treatment for hospital-acquired and ventilator-associated bacterial pneumonia in 2012 and the resulting fair value of the associated milestone were increased. This milestone would be satisfied by enrollment in such a trial to support a filing for marketing approval in either the U.S. or the European Union.

 

Contingent consideration expense may change significantly as development of CXA-201 progresses and additional data is obtained, impacting the Company’s assumptions regarding probabilities of successful achievement of related milestones used to estimate the fair value of the liability. These assumptions require significant judgment. The use of different assumptions and judgments could result in a materially different estimate of fair value. Such changes could materially impact the Company’s results of operations in future periods. In addition, any contingent consideration payments made in the future are largely not deductible for tax purposes.

 

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D.            PROPERTY AND EQUIPMENT, NET

 

Property and equipment, net consisted of the following at:

 

 

 

September 30,

 

December 31,

 

 

 

2011

 

2010

 

 

 

(in thousands)

 

Land and buildings

 

$

118,711

 

$

62,134

 

Leasehold improvements

 

 

11,650

 

Laboratory equipment

 

29,065

 

26,943

 

Furniture and fixtures

 

2,504

 

2,472

 

Computer hardware and software

 

21,250

 

20,009

 

Construction-in-progress

 

41,849

 

11,662

 

 

 

213,379

 

134,870

 

Less: accumulated depreciation

 

(55,085

)

(52,436

)

Property and equipment, net

 

$

158,294

 

$

82,434

 

 

Depreciation expense was $2.2 million and $2.4 million for the three months ended September 30, 2011 and 2010, respectively. Depreciation expense was $7.0 million and $6.5 million for the nine months ended September 30, 2011 and 2010, respectively. Property and equipment additions during the three and nine months ended September 30, 2011, related to both the construction-in-progress for the continued expansion of the Company’s principal headquarters and research laboratory and related facilities at 65 Hayden Avenue in Lexington, Massachusetts, or 65 Hayden, and the purchase of the building and land at 45-55 Hayden Avenue, Lexington, Massachusetts, or 45-55 Hayden, that was acquired in July 2011.

 

The property at 45-55 Hayden, which consists of land and approximately 210,000 square feet of primarily office space, is adjacent to the property that Cubist owns at 65 Hayden. Prior to the acquisition, Cubist leased approximately 178,000 square feet of space in the 45-55 Hayden building. The leases terminated upon the closing of the acquisition. Pursuant to the agreement of purchase and sale, Cubist paid $53.5 million, before adjustments, to acquire 45-55 Hayden, which approximated its fair value. The Company allocated $12.1 million and $44.8 million of the total acquisition cost of $56.9 million, which includes a net adjustment for existing leasehold improvements that were incorporated in the total acquisition cost, to the land and building, respectively, based on the relative fair value at the date of acquisition. The acquisition was funded from the Company’s existing cash balances.

 

E.              GOODWILL AND OTHER INTANGIBLE ASSETS, NET

 

The Company’s goodwill balance remained unchanged as of September 30, 2011, as compared to December 31, 2010. As of September 30, 2011, there were no accumulated impairment losses. Goodwill has been assigned to the Company’s only reporting unit. See Note J., “Segment Information,” for additional information.

 

Other intangible assets, net consisted of the following at:

 

 

 

September 30,

 

December 31,

 

 

 

2011

 

2010

 

 

 

(in thousands)

 

Patents

 

$

2,627

 

$

2,627

 

Manufacturing rights

 

2,500

 

2,500

 

Acquired technology rights

 

28,500

 

28,500

 

Intellectual property and processes and other intangible assets

 

5,388

 

5,388

 

 

 

39,015

 

39,015

 

Less:

accumulated amortization – patents

 

(2,353

)

(2,307

)

 

accumulated amortization – manufacturing rights

 

(2,500

)

(2,500

)

 

accumulated amortization – acquired technology rights

 

(16,827

)

(14,983

)

 

accumulated amortization – intellectual property

 

(5,388

)

(5,380

)

Intangible assets, net

 

$

11,947

 

$

13,845

 

 

Amortization expense was $0.6 million and $0.7 million for the three months ended September 30, 2011 and 2010, respectively, and $1.9 million and $2.2 million for the nine months ended September 30, 2011 and 2010, respectively. The estimated aggregate amortization of intangible assets as of September 30, 2011, for each of the five succeeding years and thereafter is as follows:

 

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(in thousands)

 

Remainder of 2011

 

$

622

 

2012

 

2,521

 

2013

 

2,521

 

2014

 

2,521

 

2015

 

2,521

 

2016 and thereafter

 

1,241

 

 

 

$

11,947

 

 

F.              DEBT

 

Debt is comprised of the following amounts at:

 

 

 

September 30,

 

December 31,

 

 

 

2011

 

2010

 

 

 

(in thousands)

 

Total 2.50% Notes outstanding at the end of the period

 

$

450,000

 

$

450,000

 

Unamortized discount

 

(99,314

)

(108,899

)

Net carrying amount of the liability component of the 2.50% Notes

 

350,686

 

341,101

 

 

 

 

 

 

 

Total 2.25% Notes outstanding at the end of the period

 

109,218

 

109,218

 

Unamortized discount

 

(10,397

)

(14,519

)

Net carrying amount of the liability component of the 2.25% Notes

 

98,821

 

94,699

 

 

 

 

 

 

 

Total carrying amount of the liability components of the 2.50% Notes and 2.25% Notes

 

$

449,507

 

$

435,800

 

 

2.50% Notes

 

In October 2010, Cubist issued $450.0 million aggregate principal amount of the 2.50% Notes due November 2017, resulting in net proceeds to Cubist, after debt issuance costs, of $436.0 million. The 2.50% Notes are convertible into common stock at an initial conversion rate of 34.2759 shares of common stock per $1,000 principal amount of convertible notes, subject to adjustment upon certain events, which is equivalent to an initial conversion price of approximately $29.18 per share of common stock. Holders of the 2.50% Notes may convert the 2.50% Notes at any time prior to the close of business on the business day immediately preceding May 1, 2017, only under the following circumstances: (i) during any calendar quarter (and only during such calendar quarter), if the last reported sale price of the common stock for at least 20 trading days (whether or not consecutive) during a period of 30 consecutive trading days ending on the last trading day of the immediately preceding calendar quarter is greater than or equal to 130% of the conversion price on each applicable trading day; (ii) during the five business day period after any five consecutive trading day period, or the measurement period, in which the trading price per $1,000 principal amount of notes for each trading day of the measurement period was less than 98% of the product of the last reported sale price of Cubist’s common stock and the conversion rate on each such trading day; or (iii) upon the occurrence of specified corporate events. Upon conversion, Cubist may deliver cash, common stock or a combination of cash and common stock, at Cubist’s option, to the note holders that requested the conversion. Interest is payable to the note holders on each May 1st and November 1st, beginning May 1, 2011. As of September 30, 2011, the “if-converted value” exceeded the principal amount of the 2.50% Notes by $94.8 million.

 

In accordance with accounting guidance for debt with conversion and other options, Cubist separately accounted for the liability and equity components of the 2.50% Notes in a manner that reflected its non-convertible debt borrowing rate of similar debt. The equity component of the 2.50% Notes was recognized as a debt discount and is amortized to the condensed consolidated statements of income over the expected life of a similar liability without the equity component. The Company determined this expected life to be equal to the seven-year term of the 2.50% Notes, resulting in an amortization period ending November 1, 2017. The net carrying value of the equity component of the 2.50% Notes as of both September 30, 2011 and December 31, 2010, was $66.4 million. The unamortized discount on the liability component is being amortized to interest expense using the effective interest method over the term of the 2.50% Notes. For the three and nine months ended September 30, 2011, the effective interest rate on the liability component of the 2.50% Notes was 7.0%. The fair value of the $450.0 million aggregate principal amount of the outstanding 2.50% Notes was estimated to be $614.3 million as of September 30, 2011, and was determined using a quoted market rate.

 

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2.25% Notes

 

In June 2006, Cubist completed the public offering of $350.0 million aggregate principal amount of its 2.25% Notes due June 2013. The 2.25% Notes are convertible at any time prior to maturity into common stock at an initial conversion rate of 32.4981 shares of common stock per $1,000 principal amount of 2.25% Notes, subject to adjustment upon certain events, which is equivalent to an initial conversion price of approximately $30.77 per share of common stock. Cubist may deliver cash or a combination of cash and common stock in lieu of shares of common stock at Cubist’s option. Interest is payable on each June 15th and December 15th. Cubist retains the right to redeem all or a portion of the 2.25% Notes at 100% of the principal amount plus accrued and unpaid interest if the closing price of Cubist’s common stock for at least 20 trading days (whether or not consecutive) during a period of 30 consecutive trading days ending on the date one day prior to the day the Company gives a notice of redemption is greater than 150% of the conversion price on the date of such notice. In February 2008, Cubist repurchased $50.0 million in original principal amount of the 2.25% Notes, reducing the outstanding amount of the 2.25% Notes from $350.0 million to $300.0 million, at an average price of approximately $93.69 per $100 of debt. These repurchases, which were funded out of the Company’s working capital, reduced Cubist’s fully-diluted shares of common stock by approximately 1,624,905 shares.

 

In October 2010, the Company used a portion of the net proceeds from the issuance of the 2.50% Notes to repurchase, in privately negotiated transactions, $190.8 million aggregate principal amount of the 2.25% Notes at an average price of approximately $105.37 per $100 par value of debt plus accrued interest and transaction fees. These repurchases reduced Cubist’s fully-diluted shares of common stock by approximately 6,200,053 shares. The remaining shares attributable to the 2.25% Notes could potentially dilute the Company’s shares of common stock outstanding if converted. As of September 30, 2011, the “if-converted value” exceeded the principal amount of the 2.25% Notes by $16.1 million.

 

In accordance with accounting guidance for debt with conversion and other options, Cubist separately accounted for the liability and equity components of the 2.25% Notes in a manner that reflected its non-convertible debt borrowing rate of similar debt. The equity component was recognized as a debt discount and is amortized to the condensed consolidated statements of income over the expected life of a similar liability without the equity component. The Company determined this expected life to be equal to the seven-year term of the 2.25% Notes, resulting in an amortization period ending June 15, 2013. The net carrying value of the equity component of the 2.25% Notes as of September 30, 2011 and December 31, 2010, was $42.5 million. The unamortized discount on the liability component is being amortized to interest expense using the effective interest method over the term of the note. For the three and nine months ended September 30, 2011 and 2010, the effective interest rate on the liability component of the 2.25% Notes was approximately 8.4%. The fair value of the $109.2 million aggregate principal amount of the outstanding 2.25% Notes was estimated to be $137.3 million as of September 30, 2011, and was determined using a quoted market rate.

 

The table below summarizes the interest expense the Company incurred on its 2.50% Notes and 2.25% Notes for the periods presented:

 

 

 

Three Months Ended
September 30,

 

Nine Months Ended
September 30,

 

 

 

2011

 

2010

 

2011

 

2010

 

 

 

(in thousands)

 

(in thousands)

 

Contractual interest coupon payment

 

$

3,427

 

$

1,687

 

$

10,290

 

$

5,063

 

Amortization of discount on debt

 

4,653

 

3,622

 

13,707

 

10,642

 

Amortization of the liability component of the debt issuance costs

 

457

 

225

 

1,371

 

674

 

Capitalized interest

 

(659

)

 

(1,783

)

 

Total interest expense

 

$

7,878

 

$

5,534

 

$

23,585

 

$

16,379

 

 

Credit Facility

 

In December 2008, Cubist entered into a $90.0 million revolving credit facility with RBS Citizens National Association, or RBS Citizens, for general corporate purposes. Under the revolving credit facility, Cubist may request to borrow at any time a minimum of $1.0 million up to the maximum of the available remaining credit. Any amounts borrowed under the facility will be secured by the pledge of a certificate of deposit issued by RBS Citizens and/or an RBS Citizens money market account equal to an aggregate of 102% of the outstanding principal amount of the loans, so long as such loans are outstanding. Interest expense on the borrowings can be based, at Cubist’s option, on LIBOR plus a margin or the prime rate. Any borrowings under the facility are due on demand or upon termination of the revolving credit agreement. There were no outstanding borrowings under the credit facility as of September 30, 2011 or December 31, 2010.

 

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G.            ACCRUED LIABILITIES

 

Accrued liabilities consisted of the following at:

 

 

 

September 30,

 

December 31,

 

 

 

2011

 

2010

 

 

 

(in thousands)

 

Accrued royalty

 

$

32,349

 

$

49,212

 

Accrued Medicaid and Medicare rebates

 

12,834

 

6,279

 

Accrued benefit costs

 

6,372

 

4,499

 

Accrued bonus

 

9,266

 

10,187

 

Accrued clinical trials

 

6,487

 

4,338

 

Accrued incentive compensation

 

4,161

 

3,687

 

Accrued interest

 

5,392

 

2,153

 

Other accrued costs

 

16,878

 

13,172

 

Accrued liabilities

 

$

93,739

 

$

93,527

 

 

Accrued royalties are comprised of royalties owed on net sales of CUBICIN under Cubist’s license agreement with Eli Lilly & Co., or Eli Lilly. Accrued royalties decreased at September 30, 2011, as compared to December 31, 2010, due to the semi-annual royalty payment made to Eli Lilly in August 2011.

 

H.            INVENTORY

 

Inventories consisted of the following at:

 

 

 

September 30,

 

December 31,

 

 

 

2011

 

2010

 

 

 

(in thousands)

 

Raw materials

 

$

10,838

 

$

7,692

 

Work-in-process

 

6,251

 

7,056

 

Finished goods

 

4,651

 

9,076

 

Inventory

 

$

21,740

 

$

23,824

 

 

In September 2011, the Company was notified by one of its third-party, fill-finish manufacturers that certain inventory batches did not meet specification and were unsaleable. The Company disposed of the work-in-process inventory and recorded a write-off of $4.7 million, which was included within cost of product revenues for the three and nine months ended September 30, 2011.

 

I.                 EMPLOYEE STOCK BENEFIT PLANS

 

Summary of Stock-Based Compensation Expense

 

Stock-based compensation expense recorded in the condensed consolidated statements of income for the three and nine months ended September 30, 2011 and 2010, is as follows:

 

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Three Months Ended
September 30,

 

Nine Months Ended
September 30,

 

 

 

2011

 

2010

 

2011

 

2010

 

 

 

(in thousands)

 

(in thousands)

 

Stock-based compensation expense allocation:

 

 

 

 

 

 

 

 

 

Cost of product revenues

 

$

66

 

$

98

 

$

160

 

$

363

 

Research and development

 

1,875

 

1,300

 

4,675

 

3,774

 

Selling, general and administrative

 

3,534

 

2,629

 

9,135

 

7,801

 

Total stock-based compensation

 

5,475

 

4,027

 

13,970

 

11,938

 

Income tax effect

 

(2,081

)

(1,588

)

(5,308

)

(4,817

)

After-tax effect of stock-based compensation expense

 

$

3,394

 

$

2,439

 

$

8,662

 

$

7,121

 

 

General Option Information

 

A summary of option activity for the nine months ended September 30, 2011, is as follows:

 

 

 

Number of
shares

 

Weighted
Average
Exercise Price

 

Outstanding at December 31, 2010

 

9,319,258

 

$

19.40

 

Granted

 

1,830,450

 

$

33.82

 

Exercised

 

(1,774,174

)

$

18.56

 

Canceled

 

(296,713

)

$

25.27

 

Outstanding at September 30, 2011

 

9,078,821

 

$

22.28

 

 

 

 

 

 

 

Vested and exercisable at September 30, 2011

 

5,575,466

 

$

19.28

 

 

 

 

 

 

 

Weighted average grant-date fair value of options granted during the period

 

 

 

$

12.40

 

 

RSU Information

 

A summary of RSU activity for the nine months ended September 30, 2011, is as follows:

 

 

 

Number of
shares

 

Weighted
Average Grant
Date Fair Value

 

Nonvested at December 31, 2010

 

411,322

 

$

19.86

 

Granted

 

366,904

 

$

34.80

 

Vested

 

(110,856

)

$

19.58

 

Forfeited

 

(24,133

)

$

21.17

 

Nonvested at September 30, 2011

 

643,237

 

$

28.38

 

 

J.              SEGMENT INFORMATION

 

Cubist operates in one business segment, the research, development and commercialization of pharmaceutical products that address unmet medical needs in the acute care environment. The Company’s entire business is managed by a single management team, which reports to the Chief Executive Officer. Approximately 95% of the Company’s revenues are currently generated within the U.S.

 

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K.            INCOME TAXES

 

The following table summarizes the Company’s effective tax rates and income tax provisions for the three and nine months ended September 30, 2011 and 2010:

 

 

 

Three Months Ended
September 30,

 

Nine Months Ended
September 30,

 

 

 

2011

 

2010

 

2011

 

2010

 

 

 

(in thousands, except percentages)

 

Effective tax rate

 

61.1

%

39.3

%

61.8

%

39.5

%

Provision for income taxes

 

$

38,081

 

$

20,225

 

$

42,453

 

$

52,045

 

 

The effective tax rates of 61.1% and 61.8% for the three and nine months ended September 30, 2011, respectively, differ from the U.S. federal statutory income tax rate of 35.0% and from the effective tax rates of 39.3% and 39.5% for the three and nine months ended September 30, 2010, respectively, primarily due to the impact of non-deductible contingent consideration expense. Contingent consideration expense recorded during the three and nine months ended September 30, 2011, impacted the effective tax rates by approximately 24.4% and 24.5%, respectively. During the three months ended September 30, 2011, the Company also recorded a discrete tax benefit of $3.1 million net of federal tax, related to the reduction in deferred state tax liabilities, as discussed below.

 

Certain stock option exercises resulted in tax deductions in excess of previously recorded benefits based on the option value at the time of grant. Although these additional tax benefits, or “windfalls”, are reflected in the net operating loss carryforwards in tax returns, pursuant to the guidance for accounting for stock-based compensation, the additional tax benefit associated with the windfall is recorded as a credit to equity as the benefits result in a reduction of current taxes. In addition, the Company’s accounting policy is to treat windfall benefits as the last tax attributes utilized. Therefore, deferred tax assets at December 31, 2010, do not reflect approximately $8.1 million of federal and state tax benefits related to stock compensation deductions on the basis that these excess tax benefits did not result in a decrease in the Company’s tax liability as of December 31, 2010.

 

The Company expects to fully utilize all tax credit carryforwards in 2011 and, therefore, with the exception of certain state tax benefits, all tax benefits related to stock-based compensation deductions will have resulted in a reduction in current taxes.  Accordingly, the Company has recorded a benefit of $13.2 million to additional paid-in capital related to these tax benefits during the nine months ended September 30, 2011, of which $5.3 million related to current year excess tax benefits in connection with stock-based compensation deductions.

 

During the first quarter of 2011, the Company made a decision to file amended state income tax returns for the years ended December 31, 2008 and 2009, and to file its 2010 state income tax returns using the same filing positions as the amended 2008 and 2009 returns. This decision resulted in an increase in the amount of uncertain tax positions of approximately $11.0 million for state tax purposes for the three months ended March 31, 2011. During the three months ended September 30, 2011, as a result of a change in circumstances impacting certain state tax filing positions related to years beginning in 2012, the Company reevaluated its uncertain tax positions and recognized a discrete tax benefit of $4.8 million, or $3.1 million net of federal tax, related to the reduction in deferred state tax liabilities, and maintained a reserve of approximately $5.4 million for uncertain tax positions as of September 30, 2011, related to prior years.

 

L. COMMITMENTS

 

Astellas Milestone

 

Cubist has an obligation to make milestone payments to Astellas Pharma, Inc., or Astellas, under the Astellas license agreement, as amended, in which the Company has exclusive rights to manufacture, market and sell any eventual products which incorporate CXA-101, including CXA-201, in all territories of the world except select Asia-Pacific and Middle Eastern territories and to develop such products in all territories of the world. Pursuant to the agreement, the Company made a $4.0 million development milestone payment to Astellas as a result of first patient enrollment in a Phase 3 clinical trial of CXA-201 for cUTI. This milestone payment was recorded as research and development expense within the condensed consolidated income statements for the three and nine months ended September 30, 2011. Remaining milestone payments to Astellas under the Astellas license agreement could total up to $40.0 million if certain specified development and sales events are achieved. The remaining potential development and sales milestone payments to Astellas will be expensed as incurred to research and development and cost of product revenues, respectively. In addition, if products covered by this license are successfully developed and commercialized in the territories, Cubist will be

 

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required to pay Astellas tiered single-digit royalties on net sales of such products in such territories, subject to offsets under certain circumstances.

 

M.   SUBSEQUENT EVENT

 

On October 24, 2011, the Company entered into the Merger Agreement to acquire all of the issued and outstanding shares of Adolor, a publicly-held biopharmaceutical company specializing in the discovery, development and commercialization of novel prescription pain and pain management products, in a cash transaction valued at up to $415.0 million, net of estimated cash acquired, based upon Adolor’s cash balances at September 30, 2011. Under the terms of the Merger Agreement, the Company will commence a tender offer to purchase all of the outstanding shares of Adolor’s common stock at a price of $4.25 per share in cash, or approximately $190.0 million on a fully-diluted basis, net of cash acquired. The aggregate cash to be paid is subject to adjustment based upon Adolor’s cash balance at the time of closing of the acquisition. In addition to the upfront cash payment, each Adolor stockholder will receive one contingent payment right, entitling the holder to receive additional cash payments of up to $4.50 for each share they own if certain regulatory approvals and/or commercialization milestones for ADL5945, Adolor’s lead development program for the treatment of chronic opioid-induced constipation, are achieved.

 

Consummation of the pending acquisition of Adolor is subject to various customary closing conditions, including but not limited to: (i) tender of a majority of the outstanding shares, on a fully diluted basis, into the tender offer; (ii) receipt of applicable regulatory approvals; and (iii) the absence of a material adverse change with respect to Adolor. The transaction, which has been unanimously approved by the Boards of Directors of both companies, is expected to close in the fourth quarter of 2011. The Company expects to fund the acquisition of Adolor, if consummated, with its existing cash balances.

 

The actual timing of the pending acquisition of Adolor will depend on a number of factors, including the satisfaction of certain conditions set forth in the Merger Agreement, including those set forth above. There can be no assurance that the pending acquisition of Adolor will be consummated or that, if the transaction is consummated, the timing will be as described and as presently contemplated.

 

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ITEM 2. MANAGEMENT’S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS

 

CAUTIONARY NOTE REGARDING FORWARD-LOOKING STATEMENTS

 

This document contains and incorporates by reference ‘‘forward-looking statements.” In some cases, these statements can be identified by the use of forward-looking terminology such as ‘‘may,” ‘‘will,” ‘‘could,” ‘‘should,” ‘‘would,” ‘‘expect,” ‘‘anticipate,” “plan,” “forecast,” ‘‘continue” or other similar words. These statements discuss future expectations, contain projections of results of operations or of financial condition, or state trends and known uncertainties or other forward-looking information. You are cautioned that forward-looking statements are inherently uncertain, and we caution you not to place considerable reliance on such statements. Our business is subject to substantial risks and uncertainties, including those identified in this report, that could cause actual results to differ materially from those expressed or implied by such forward-looking statements. We refer you to Item 1A., “Risk Factors,” in Part II of this report, which we incorporate herein by reference, for identification of important factors with respect to these risks and uncertainties. The information contained in this Quarterly Report is provided by us as of the date of this Quarterly Report, and we do not undertake any obligation to update any forward-looking statements contained in this document as a result of new information, future events or otherwise.

 

Forward-looking statements in this Quarterly Report include, without limitation, statements regarding:

 

·                  our expectations regarding our financial performance, including revenues, expenses, capital expenditures and income taxes;

 

·                  our expectations regarding the commercialization and manufacturing of CUBICIN® (daptomycin for injection);

 

·                  our expectations regarding the strength of our intellectual property portfolio protecting CUBICIN and our ability to enforce this intellectual property portfolio and prevent any third parties from marketing a generic version of CUBICIN in the United States, or U.S., before the earlier of the expiration of certain of the patents covering CUBICIN and the date Teva Parenteral Medicines, Inc., or Teva, is allowed to launch a generic version of CUBICIN under our settlement and license agreement, or settlement agreement, with Teva and its affiliates;

 

·                  our expectations regarding our drug candidates, including the anticipated timing and results of our clinical trials, timing of our meetings with regulatory authorities, and the development, regulatory review and commercial potential of such drug candidates and the costs and expenses related thereto;

 

·                  our expectations regarding advancing clinical development, filing for approval, including in which countries and regions we expect such filings to occur, and the commercialization of CXA-201 for its currently planned indications of complicated urinary tract infections, or cUTI, complicated intra-abdominal infections, or cIAI, hospital-acquired bacterial pneumonia, or HABP, and ventilator-associated bacterial pneumonia, or VABP, our characterization of results received to date, including receipt of positive top-line results from our recently completed Phase 2 clinical trial of CXA-201 as a potential treatment for cIAI, and our estimates of potential future milestone payments to the former stockholders of Calixa Therapeutics Inc., or Calixa, based on such advancement of CXA-201;

 

·                  our expectations regarding the commercial success of DIFICIDTM;

 

·                  the continuation or termination of our collaborations and our other significant agreements and our ability to establish and maintain successful manufacturing, supply, sales and marketing, distribution and development collaborations and other arrangements;

 

·                  our expectations regarding the closing, and the timing of closing, of our planned acquisition of Adolor Corporation, or Adolor;

 

·                  our expected efforts to evaluate product candidates and build our pipeline;

 

·                  the liquidity and credit risk of securities that we hold as investments;

 

·                  the impact of current and new accounting pronouncements;

 

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·                  our expectations regarding the impact of U.S. health care reform legislation enacted in March 2010, or health care reform;

 

·                  our expectations regarding the timing and completion of the construction project to expand our principal headquarters and research laboratory and related facilities at 65 Hayden Avenue in Lexington, Massachusetts, or 65 Hayden;

 

·                  our future capital requirements and capital expenditures and our ability to finance our operations, debt obligations and capital requirements; and

 

·                  our expectations regarding the impact of ordinary course legal proceedings.

 

Many factors could cause our actual results to differ materially from these forward-looking statements. These factors include the following:

 

·                  the U.S. Federal Trade Commission, or FTC, the U.S. Department of Justice, or DOJ, or a third party successfully challenging the settlement agreement with Teva and its affiliates;

 

·                  the level of acceptance of CUBICIN by physicians, patients, third-party payors and the medical community;

 

·                  any changes in the current or anticipated market demand or medical need for CUBICIN, including as a result of the current flattened growth of the incidence of methicillin-resistant Staphylococcus aureus (S. aureus), or MRSA, skin and bloodstream infections or the economic conditions in the U.S. and around the world, which are leading to cost pressures at hospitals and other institutions where CUBICIN is prescribed and purchased;

 

·                  any unexpected adverse events related to CUBICIN, particularly as CUBICIN is used in the treatment of a growing number of patients around the world;

 

·                  the effectiveness of our sales force and our sales force’s ability to access targeted physicians;

 

·                  competition in the markets in which we and our partners market CUBICIN, including from existing products and new agents, such as Teflaro™ (ceftaroline fosamil), that have recently received marketing approval in the U.S.;

 

·                  whether or not third parties other than Teva seek to market generic versions of CUBICIN or any other products that we commercialize in the future and the results of any litigation that we file to defend and/or assert our patents against such third parties;

 

·                  the effect that the results of ongoing or future clinical trials of CUBICIN may have on its acceptance in the medical community;

 

·                  whether our partners will receive, and the potential timing of, regulatory approvals or clearances to market CUBICIN in countries where it is not yet approved;

 

·                  in the case of our planned acquisition of Adolor, the failure to satisfy any of the closing conditions set forth in the Agreement and Plan of Merger, or Merger Agreement;

 

·                  the ability of our third-party manufacturers, including our single source provider of CUBICIN active pharmaceutical ingredient, or API, and our two finished drug product suppliers, to manufacture, store, release and deliver sufficient quantities of CUBICIN in accordance with Good Manufacturing Practices, or GMPs, which are guidelines required by the U.S. Food and Drug Administration, or FDA, and other requirements of the regulatory approvals for CUBICIN, which include adherence to strictly-specified processes, in order to meet market demand for our sales in the U.S. and for our supply obligations to our international CUBICIN distribution partners, and to do so at an acceptable cost;

 

·                  our ability to work successfully with Optimer Pharmaceuticals, Inc., or Optimer, with respect to promoting and supporting DIFICID in the U.S. and similar market and competitive factors with respect to DIFICID in the U.S. as those described above with respect to CUBICIN;

 

·                  our ability to discover, acquire or in-license drug candidates, the costs related thereto, and the high level of competition from other companies that also are seeking to discover, acquire or in-license the same or similar drug candidates;

 

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·                  whether the FDA or comparable agencies around the world such as the European Medicines Agency, or EMA, issue guidelines that allow for a viable pathway for us to seek approvals for our drug candidates in the indications for which we hope to gain approvals; whether the FDA, EMA or comparable agencies around the world accept proposed clinical trial protocols in a timely manner for studies of our drug candidates; and our ability to execute successful, adequate and well-controlled clinical trials in a timely manner and other risks that may cause our trials to be delayed or stopped or compromise the integrity of the data from such trials;

 

·                  the impact of the results of ongoing or future trials for drug candidates that we currently are developing, including CXA-201 and CB-183,315, or may develop in the future, including the impact of unanticipated safety or efficacy data from such trials;

 

·                  our ability, and our partners’ ability, to protect the proprietary technologies and intellectual property related to CUBICIN and our product candidates;

 

·                  our ability to develop and achieve commercial success, and secure sufficient quantities of supply for such development and commercialization, for our existing and future drug candidates, particularly as we are managing multiple programs and opportunities and continue to seek to maximize the commercial success of CUBICIN and DIFICID;

 

·                  the impact of current and future health care reform, or changes to the existing legislation, and of other future legislative and policy changes in the U.S. and other jurisdictions where our products are sold, including price controls or taxes, that may affect our revenues or results of operations or the ease of getting a new product or a new indication approved;

 

·                  our ability to successfully integrate the operations of any business that we may acquire and the potential impact of any future acquisition on our financial results;

 

·                  unanticipated changes in our expectations for revenues, expenses or capital expenditures, and the impact on our effective tax rates;

 

·                  changes in government reimbursement for our or our competitors’ products;

 

·                  our dependence upon collaborations and alliances, particularly our ability to work effectively with our partners and our partners’ ability to meet their obligations and perform effectively under our agreements and to do so in compliance with applicable laws, including laws in international jurisdictions and U.S. laws, such as the Foreign Corrupt Practices Act, or FCPA, that relate to activities in international markets;

 

·                  our ability to attract and retain talented employees in order to grow our employee base and infrastructure to support the continued growth of our business;

 

·                  our ability to finance our operations;

 

·                  potential costs resulting from product liability or other third-party claims;

 

·                  unexpected delays or expenses related to our pipeline programs or ongoing capital projects, including the expansion of our laboratories and related space at our 65 Hayden facility; and

 

·                  a variety of risks common to our industry, including ongoing regulatory review, public and investment community perception of the biopharmaceutical industry, statutory or regulatory changes including with respect to federal and state taxation, and our ability to attract and retain talented employees.

 

This Management’s Discussion and Analysis of Financial Condition and Results of Operations, or MD&A, is provided in addition to the accompanying condensed consolidated financial statements and footnotes to assist readers in understanding our results of operations, financial condition and cash flows. We have organized the MD&A as follows:

 

·                  Overview: This section provides a summary of our business, of our product pipeline and of our performance during the three and nine months ended September 30, 2011.

 

·                  Results of Operations: This section provides a review of our results of operations for the three and nine months ended September 30, 2011 and 2010, respectively.

 

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Table of Contents

 

·                  Liquidity and Capital Resources: This section provides a summary of our financial condition, including our sources and uses of cash, capital resources, commitments and liquidity.

 

·                  Commitments and Contingencies: This section provides a summary of our material legal proceedings and commitments and contingencies that are outside our normal course of business, as well as our commitment to make potential future milestone payments to third parties as part of our various business agreements.

 

·                  Critical Accounting Policies and Estimates: This section describes our critical accounting policies and the significant judgments and estimates that we have made in preparing our condensed consolidated financial statements, as well as recently issued accounting pronouncements that we have not yet adopted.

 

Overview

 

We are a biopharmaceutical company headquartered in Lexington, Massachusetts, focused on the research, development and commercialization of pharmaceutical products that address unmet medical needs in the acute care environment. CUBICIN is, and our current drug product candidates, if granted marketing approval, are expected to be, used in the U.S. approximately equally in hospitals and other acute care settings, including home infusion and outpatient clinics. Outside of the U.S., where outpatient infusion is a less established practice, the use of CUBICIN is primarily in the hospital setting.

 

We had a total of $975.2 million in cash, cash equivalents and investments as of September 30, 2011, as compared to $909.9 million in cash, cash equivalents and investments as of December 31, 2010. As of September 30, 2011, we had an accumulated deficit of $111.1 million.

 

On October 24, 2011, we entered into the Merger Agreement with Adolor, a publicly-held biopharmaceutical company specializing in the discovery, development and commercialization of novel prescription pain and pain management products, in a cash transaction valued at up to $415.0 million, net of estimated cash acquired, based upon Adolor’s cash balances at September 30, 2011. Under the terms of the Merger Agreement, we will commence a tender offer to purchase all of the outstanding shares of Adolor’s common stock at a price of $4.25 per share in cash, or approximately $190.0 million on a fully-diluted basis, net of cash acquired. The aggregate cash to be paid is subject to adjustment based upon Adolor’s cash balance at the time of closing of the acquisition. In addition to the upfront cash payment, each Adolor stockholder will receive one contingent payment right, entitling the holder to receive additional cash payments of up to $4.50 for each share they own if certain regulatory approvals and/or commercialization milestones for ADL5945, Adolor’s lead development program for the treatment of chronic opioid-induced constipation, are achieved.

 

Consummation of the pending acquisition of Adolor is subject to various customary closing conditions. The transaction, which has been unanimously approved by the Boards of Directors of both companies, is expected to close in the fourth quarter of 2011. We expect to fund the acquisition of Adolor, if consummated, with our existing cash balances. See Note M., “Subsequent Event,” in the accompanying notes to the condensed consolidated financial statements for additional information.

 

During the nine months ended September 30, 2011, we recognized $85.0 million of contingent consideration expense related to increasing the fair value of our contingent consideration liability, which resulted in a net loss of $20.6 million during the second quarter of 2011. See the “Results of Operations” and “Commitments and Contingencies” sections of this MD&A for additional information. The following table is a summary of our financial results for the periods presented:

 

 

 

Three Months Ended September 30,

 

Nine Months Ended September 30,

 

 

 

2011

 

2010