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Symyx Technologies 10-Q 2008
form10-q.htm


UNITED STATES
SECURITIES AND EXCHANGE COMMISSION
Washington, DC 20549

Form 10-Q

 (Mark One)

x
QUARTERLY  REPORT  PURSUANT  TO  SECTION  13 OR 15(d)  OF THE  SECURITIES EXCHANGE ACT OF 1934

For the quarterly period ended June 30, 2008

or

o
TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the transition period from _________ to _________

Commission File Number:  000-27765

SYMYX TECHNOLOGIES, INC.
(Exact name of registrant as specified in its chapter)
 
Delaware
(State or other jurisdiction of
incorporation or organization)
77-0397908
(I.R.S. Employer
Identification No.)
   
1263 East Arques Avenue
Sunnyvale, California
(Address of principal executive offices)
 
94085
(Zip Code)
   
(408) 764-2000
(Registrant's telephone number, including area code)

Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports) and, (2) has been subject to such filing requirements for the past 90 days.
Yes ý No o

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, or a smaller reporting company. See definitions of “large accelerated filer,”  “accelerated filer” and “smaller reporting company” in Rule 12b-2 of the Exchange Act. (Check one).
o Large accelerated filer                                                                                                     ý Accelerated filer
o Non-accelerated filer (Do not check if a smaller reporting company)                     o Smaller reporting company
 
Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act).
oYes ý No 

As of July 31, 2008, Registrant had outstanding 33,785,079 shares of Common Stock, $0.001 par value.
 


 
 

 

TABLE OF CONTENTS


   
PAGE
 
Part I: Financial Information
   
       
       
Item 1.
   
 
1
 
 
2
 
 
3
 
 
4
 
Item 2.
16
 
Item 3.
26
 
Item 4.
26
 
Item 4T.
26
 
       
 
Part II: Other Information
   
       
       
Item 1A.
27
 
Item 4.
38
 
Item 6.
39
 
       
       
 
40
 
       
 
41
 


PART I:  FINANCIAL INFORMATION

ITEM 1. FINANCIAL STATEMENTS

SYMYX TECHNOLOGIES, INC.

CONDENSED CONSOLIDATED STATEMENTS OF OPERATIONS
(In thousands, except per share amounts)
(Unaudited)
   
Three Months Ended June 30,
   
Six Months Ended
June 30,
 
   
2008
   
2007
   
2008
   
2007
 
                         
Revenue:
                       
Service revenue
  $ 20,240     $ 13,454     $ 38,755     $ 27,027  
Product sales
    5,017       5,864       9,584       10,482  
License fees, content and royalties
    15,394       6,239       29,219       13,015  
Total revenue
    40,651       25,557       77,558       50,524  
                                 
Costs:
                               
Cost of service
    5,174       1,843       9,840       3,523  
Cost of products sold
    2,112       3,247       4,299       4,913  
Cost of license fees, content and royalties
    1,315       --       2,918       --  
Amortization of intangible assets arising from business combinations
    1,786       700       3,567       1,399  
Total cost of revenue
    10,387       5,790       20,624       9,835  
Gross profit
    30,264       19,767       56,934       40,689  
                                 
Operating expenses:
                               
Research and development
    19,729       14,529       40,416       29,942  
Sales, general and administrative
    14,288       9,488       29,521       19,105  
Amortization of intangible assets arising from business     combinations
    1,479       258       2,956       519  
Total operating expenses
    35,496       24,275       72,893       49,566  
                                 
Loss from operations
    (5,232 )     (4,508 )     (15,959 )     (8,877 )
Interest and other income, net
    2,792       1,786       2,396       3,494  
Loss before income tax benefit and equity loss
    (2,440 )     (2,722 )     (13,563 )     (5,383 )
Income tax benefit
    915       1,252       5,246       3,155  
Equity in loss from investment in Visyx Technologies Inc.
    --       --       --       (214 )
Net loss
  $ (1,525 )   $ (1,470 )   $ (8,317 )   $ (2,442 )
                                 
Basic and diluted net loss per share
  $ (0.05 )   $ (0.04 )   $ (0.25 )   $ (0.07 )
                                 
Shares used in computing basic and diluted net loss per share
    33,720       33,316       33,631       33,192  
 
 
See accompanying notes to condensed consolidated financial statements


SYMYX TECHNOLOGIES, INC.

CONDENSED CONSOLIDATED BALANCE SHEETS
(In thousands, except per share amounts)

   
June 30,
   
December 31,
 
   
2008
   
2007
 
   
(Unaudited)
   
(Note 1)
 
ASSETS
           
Current assets:
           
Cash and cash equivalents
  $ 88,164     $ 37,077  
Marketable securities
    --       8,395  
Accounts receivable, net
    12,517       23,047  
Inventories
    5,621       4,077  
Receivable from the seller of an acquired business
    --       4,954  
Income tax receivable
    1,750       --  
Deferred tax assets, current
    3,850       2,984  
Other current assets
    5,906       5,994  
       Total current assets                                                                                             
    117,808       86,528  
                 
Property, plant and equipment, net                                                                                             
    29,629       32,969  
Goodwill                                                                                             
    116,301       114,110  
Intangible assets, net                                                                                             
    60,043       66,405  
Long-term investments                                                                                             
    13,500       13,500  
Other assets                                                                                             
    1,307       1,470  
Total assets
  $ 338,588     $ 314,982  
                 
LIABILITIES AND STOCKHOLDERS’ EQUITY
               
Current liabilities:
               
Accounts payable
  $ 3,322     $ 2,124  
Other accrued liabilities
    10,003       9,735  
Accrued compensation and employee benefits
    10,684       11,364  
Accrued royalties
    3,654       3,692  
Income taxes payable
    6,501       2,756  
Accrued restructuring costs
    632       2,275  
Deferred rent
    950       871  
Deferred revenue
    43,321       15,905  
Accrued warranty
    1,526       1,728  
Total current liabilities
    80,593       50,450  
                 
Long-term deferred revenue                                                                                             
    2,627       --  
Noncurrent deferred tax liabilities                                                                                             
    7,742       12,291  
Noncurrent liabilities                                                                                             
    10,369       12,291  
Commitments and contingencies (Note 1)
               
                 
Stockholders' equity:
               
Common stock, $0.001 par value, 60,000 shares authorized and 33,779 and 33,589 shares issued and outstanding, respectively
    34       34  
Additional paid-in capital
    204,850       203,237  
Accumulated other comprehensive income
    2,690       601  
Retained earnings
    40,052       48,369  
Total stockholders' equity
    247,626       252,241  
Total liabilities and stockholders’ equity
  $ 338,588     $ 314,982  

See accompanying notes to condensed consolidated financial statements

 
SYMYX TECHNOLOGIES, INC.

CONDENSED CONSOLIDATED STATEMENTS OF CASH FLOWS
(In thousands)
(Unaudited)
   
Six Months Ended
June 30,
 
   
2008
   
2007
 
Operating activities
           
Net loss
  $ (8,317 )   $ (2,442 )
Adjustments to reconcile net loss to net cash provided by operating activities:
               
Depreciation and amortization
    5,712       3,004  
Amortization of intangible assets arising from business combinations
    6,522       1,918  
Stock-based compensation
    2,161       3,581  
Gain from sale of assets
    (1,606 )     --  
Equity in loss from investment in Visyx Technologies Inc.
    --       214  
Deferred income taxes
    (5,724 )     2,003  
Excess tax benefits from stock-based compensation
    --       (148 )
Tax deficiency from employee stock transactions
    (895 )     (917 )
Net changes in operating assets and liabilities
               
Accounts receivable, net
    10,706       10,523  
Inventories
    (1,432 )     (3,306 )
Other current assets
    143       231  
Other long-term assets
    184       530  
Accounts payable
    1,169       (1,808 )
Other accrued liabilities
    673       600  
Accrued compensation and employee benefits
    (800 )     (1,560 )
Accrued royalty
    (38 )     --  
Income taxes receivable or payable
    1,923       (9,579 )
Accrued restructuring costs
    (1,594 )     --  
Deferred rent
    79       76  
Deferred revenue
    30,481       2,538  
Accrued warranty
    (207 )     (134 )
Net cash provided by operating activities                                                                                                 
    39,140       5,324  
                 
Investing activities
               
Purchase of property, plant and equipment, net
    (2,165 )     (4,738 )
Proceeds from sale of divested assets
    694       --  
Purchase of marketable securities
    --       (101,932 )
Proceeds from maturities of marketable securities
    8,400       81,025  
Receipts from the seller of an acquired business and costs related to a business acquisition
    5,106       --  
Net cash provided by (used in) investing activities
    12,035       (25,645 )
                 
Financing activities
               
Proceeds from issuance of common stock
    826       1,552  
Payment of employee withholding tax in lieu of issuing common stock  for restricted stock units vested
    (479 )     (1,956 )
Excess tax benefits from stock-based compensation
    --       148  
Net cash provided by (used in) financing activities
    347       (256 )
                 
Effect of foreign exchange rate changes on cash and cash equivalents
    (435 )     (13 )
Net increase (decrease) in cash and cash equivalents
    51,087       (20,590 )
Cash and cash equivalents at beginning of period
    37,077       36,120  
Cash and cash equivalents at end of period
  $ 88,164     $ 15,530  
 
See accompanying notes to condensed consolidated financial statements


SYMYX TECHNOLOGIES, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (CONTINUED)
 
 
1.      Summary of Significant Accounting Policies

Business and Basis of Presentation

Symyx Technologies, Inc. (together with its wholly-owned subsidiaries, the Company or Symyx) is a global provider of research and development (R&D) execution and innovation for the chemicals, energy, life science, consumer product and other industries. Symyx performs research for customers using proprietary technologies to discover new and innovative materials, sells automated high-throughput instrumentation, licenses software for use in customers’ own laboratories, and licenses discovered materials and intellectual property.

Symyx incorporated in California on September 20, 1994 and reincorporated in Delaware in February 1999. Symyx’s headquarters are in Sunnyvale, California.

Management has prepared the accompanying unaudited condensed consolidated balance sheet as of June 30, 2008, the condensed consolidated statements of operations for the three and six month periods ended June 30, 2008 and 2007, respectively, and the condensed consolidated statements of cash flows for the six month periods ended June 30, 2008 and 2007, respectively, in accordance with U.S. generally accepted accounting principles (GAAP) for interim financial information and pursuant to the instructions to Form 10-Q and Article 10 of Regulation S-X. Certain information and footnote disclosures normally included in consolidated financial statements prepared in accordance with U.S. GAAP have been condensed or omitted pursuant to the rules and regulations of the Securities Exchange Commission (SEC). In management’s opinion, all adjustments (which include only normal recurring adjustments) necessary to present fairly the consolidated financial position of Symyx at June 30, 2008 and the results of operations and cash flows for all periods presented have been made. The condensed consolidated balance sheet at December 31, 2007 was derived from the audited financial statements at that date, but does not include all of the disclosures required by U.S. GAAP for complete financial statements.

Because all of the disclosures required by U.S. GAAP in complete financial statements are not included herein, these condensed consolidated financial statements and the notes accompanying them should be read in conjunction with the Company's audited financial statements and the notes thereto included in the Company's 2007 Annual Report on Form 10-K for the fiscal year ended December 31, 2007 filed with the SEC. The consolidated results of operations for the three and six months ended June 30, 2008 are not necessarily indicative of the results to be expected for any subsequent quarter or for the entire fiscal year ending December 31, 2008.

Principles of Consolidation

These condensed consolidated financial statements include the accounts of the Company and its wholly-owned subsidiaries. Symyx accounts for equity investments in companies over which Symyx has the ability to exercise significant influence, but does not hold a controlling interest, under the equity method.  Accordingly, Symyx records its proportionate share of income or losses in the condensed consolidated statements of operations. Symyx has eliminated all significant intercompany accounts and transactions.

Use of Estimates

Preparing financial statements in accordance with U.S. GAAP requires management to make estimates and assumptions that affect the reported amounts in Symyx’s consolidated financial statements and accompanying notes. Estimates include the forfeiture rates for stock-based awards, future warranty expenditures and product life cycles, and assumptions such as the elements comprising a revenue arrangement, including the distinction between software upgrades/enhancements and new products, when the Company’s products achieve technological feasibility, and the potential outcome of future tax consequences of events recognized in the Company’s financial statements or tax returns. Actual results and outcomes may differ from management’s estimates and assumptions. For example, if system failures or the cost to repair systems are significantly greater than the rates used in estimating the accrued warranty, the additional charges could have a material unfavorable impact on the Company's financial results in the relevant period(s).


SYMYX TECHNOLOGIES, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (CONTINUED)


Customer Indemnification

From time to time, the Company agrees to indemnify its customers against certain third party liabilities, including liability if its products infringe a third party’s intellectual property rights. The Company accounts for such indemnification provisions in accordance with the Financial Accounting Standards Board (FASB) Interpretation No. 45, Guarantor's Accounting and Disclosure Requirements for Guarantees, Including Indirect Guarantees of Indebtedness of Others. The Company’s indemnification obligation in these arrangements is typically limited to no more than the amount paid by the customer. As of June 30, 2008, the Company was not subject to any pending intellectual property-related litigation. The Company has not received any requests for and has not been required to make any payments under these indemnification provisions.

Contingencies

In July 2006, the Company acquired all of the outstanding shares of Autodose SA (Autodose).  Pursuant to the terms of the merger agreement the Company entered into with Autodose, the former stockholders of Autodose are eligible to receive additional purchase price consideration of up to 7,100,000 Swiss Franc (equivalent to $6,968,000 using the foreign currency exchange rate in effect on June 30, 2008) upon achievement of certain 2008 and 2009 revenue targets with respect to the Company’s Autodose product line. The Company evaluates the likelihood of achieving these targets from time to time. If any of the revenue targets are met, the Company would record the fair value of any additional consideration as an additional cost of the acquisition. No additional consideration was recorded as of June 30, 2008.

Revenue Concentration

For the three and six months ended June 30, 2008 and 2007, the following customers contributed more than 10% of the Company’s total revenue (in thousands):

   
Three Months Ended June 30,
   
Six Months Ended
June 30,
 
   
2008
   
2007
   
2008
   
2007
 
ExxonMobil
  $ 6,217     $ 8,595     $ 13,926     $ 19,622  
The Dow Chemical Company
    6,649       6,994       12,483       12,467  
Total
  $ 12,866     $ 15,589     $ 26,409     $ 32,089  

The revenue from these customers has been included in the following reportable segments (Note 6) for the three and six months ended June 30, 2008 and 2007 (in thousands):

   
Three Months Ended June 30,
   
Six Months Ended
June 30,
 
   
2008
   
2007
   
2008
   
2007
 
Symyx Research
  $ 8,094     $ 11,040     $ 17,705     $ 22,541  
Symyx Tools
    2,200       2,217       3,921       4,869  
Symyx Software
    2,572       2,332       4,783       4,679  
Total
  $ 12,866     $ 15,589     $ 26,409     $ 32,089  

The revenue from these customers has been included in the Condensed Consolidated Statements of Operations as follows (in thousands):
   
Three Months Ended June 30,
   
Six Months Ended
June 30,
 
   
2008
   
2007
   
2008
   
2007
 
Service revenue
  $ 7,357     $ 8,940     $ 14,510     $ 18,220  
Product sales
    1,847       1,798       2,949       4,133  
License fees, content and royalties
    3,662       4,851       8,950       9,736  
Total
  $ 12,866     $ 15,589     $ 26,409     $ 32,089  


SYMYX TECHNOLOGIES, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (CONTINUED)


Inventories

Raw materials inventory consists of purchased parts. Work-in-process inventory consists of purchased parts and fabricated sub-assemblies for Symyx Tools in the process of being built. Finished goods inventory consists of completed systems ready for shipment to customers. At each balance sheet date, the Company examines its ending inventories for possible excess quantities and obsolescence. This evaluation includes analysis of sales levels by product and projections of future demand. The Company writes down inventories on hand in excess of forecasted demand and writes off inventories that it considers obsolete. Additionally inventories are carried at the lower of cost or market, with cost determined on a specific identification basis. The Company’s inventory balances at June 30, 2008 and December 31, 2007 were as follows (in thousands):

   
June 30, 2008
   
December 31, 2007
 
Raw materials
  $ 482     $ 269  
Work-in-process
    4,427       2,707  
Finished goods
    712       1,101  
Total
  $ 5,621     $ 4,077  

Accrued Warranty

The Company offers a warranty on each Symyx Tools system sold to a customer. Warranty terms vary depending upon the product sold and country in which the transaction occurs. However, warranties typically include parts and labor and software bug fixes for a specified period (typically one year). The Company estimates warranty costs to be incurred under its basic limited warranty and records a liability in the amount of such costs at the time product revenue is recognized. Factors that affect the Company’s warranty liability include the number of installed units, historical and anticipated rates of warranty claims, and cost per claim. The Company periodically assesses the adequacy of its recorded warranty liabilities and adjusts the amounts, as necessary. Changes in the Company’s product warranty expense accrual during the six months ended June 30, 2008 and 2007 were as follows (in thousands):

   
2008
   
2007
 
Balance as of January 1
  $ 1,728     $ 952  
New warranties issued during the period
    427       367  
Costs incurred during the period on specific systems
    (325 )     (274 )
Changes in liability for pre-existing warranties during the period, including expirations
    (304 )     (227 )
Balance as of June 30
  $ 1,526     $ 818  

Goodwill and Intangible Assets

The Company’s goodwill at June 30, 2008 and December 31, 2007 is reported under two reporting units as follows (in thousands):

   
June 30, 2008
   
December 31, 2007
 
Symyx Software
  $ 115,845     $ 113,699  
Symyx Tools
    456       411  
Total
  $ 116,301     $ 114,110  

 
The Company’s goodwill balance increased $2,191,000 during the six months ended June 30, 2008 primarily due to the effect of foreign currency exchange rate fluctuation on the goodwill recorded by the Company’s subsidiaries in foreign currencies.
 
Intangible assets are amortized using the straight-line method over their estimated periods of benefit, ranging from one to eight years.
 

SYMYX TECHNOLOGIES, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (CONTINUED)


The impairment review process for other intangible assets under SFAS 144 is based on an undiscounted future cash flow approach that uses the Company’s estimates of revenue and estimated costs.

No impairments of goodwill or intangible assets have been identified during any of the periods presented.

Effect of New Accounting Pronouncements

In September 2006, the FASB issued SFAS No. 157 (SFAS 157), Fair Value Measurements. SFAS 157 provides guidance for using fair value to measure assets and liabilities. It also responds to investors' requests for expanded information about the extent to which companies measure assets and liabilities at fair value, the information used to measure fair value, and the effect of fair value measurements on earnings.  SFAS 157 applies whenever other standards require (or permit) assets or liabilities to be measured at fair value, and does not expand the use of fair value in any new circumstances.  SFAS 157 is effective for financial statements issued for fiscal years beginning after November 15, 2007. In February 2008, the FASB issued Staff Position 157-2 (FSP 157-2), Effective Date of FASB Statement No. 157, which delays the effective date of SFAS 157 for all nonfinancial assets and nonfinancial liabilities, except for items that are recognized or disclosed at fair value in the financial statements on a recurring basis (at least annually), to fiscal years beginning after November 15, 2008.  Accordingly, the Company adopted certain provisions of SFAS 157 on January 1, 2008 on a prospective basis for its financial assets and liabilities, which require that the Company determine the fair value of financial assets and liabilities using the fair value hierarchy established in SFAS 157. The Company also elected to delay the adoption of SFAS 157 for its nonfinancial assets/liabilities under FSP 157-2 until January 1, 2009.

SFAS 157 describes three levels of inputs that may be used to measure fair value, as follows:

 
·
Level 1 inputs, which include quoted prices in active markets for identical assets or liabilities;

 
·
Level 2 inputs, which include observable inputs other than Level 1 inputs, such as quoted prices for similar assets or liabilities; quoted prices for identical or similar assets or liabilities in markets that are not active; or other inputs that are observable or can be corroborated by observable market data for substantially the full term of the asset or liability; and

 
·
Level 3 inputs, which include unobservable inputs that are supported by little or no market activity and that are significant to determining the fair value of the underlying asset or liability. Level 3 assets and liabilities include those whose fair value measurements are determined using pricing models, discounted cash flow methodologies or similar valuation techniques, as well as significant management judgment or estimation.

In accordance with SFAS 157, at June 30, 2008, the Company measures its cash equivalents at fair value using Level 1 inputs. The adoption of SFAS 157 had no material effect on the Company’s consolidated results of operations and financial condition.

In December 2007, the FASB issued SFAS No. 141(R) (revised 2007) (SFAS 141(R)), Business Combinations. Under SFAS No. 141(R), an entity is required to recognize the assets acquired, liabilities assumed, contractual contingencies, and contingent consideration in connection with an acquired business at their fair value on the acquisition date. It further requires that: acquisition-related costs be recognized separately from the acquisition and expensed as incurred, restructuring costs generally be expensed in periods subsequent to the acquisition date, and changes in accounting for deferred tax asset valuation allowances and acquired income tax uncertainties after the measurement period impact income tax expense. In addition, acquired in-process research and development (IPR&D) is capitalized as an intangible asset and amortized over its estimated useful life. The adoption of SFAS 141(R) will change the Company’s accounting treatment for business combinations taking place after January 1, 2009.

In December 2007, the FASB issued SFAS No. 160 (SFAS 160), Noncontrolling interests in Consolidated Financial Statements, an amendment of ARB No. 51. SFAS 160 is based on the economic entity concept of consolidated financial statements, under which all residual economic interest holders in an entity have an equity interest in the consolidated entity, even if the residual interest is relative to only a portion of the entity. SFAS 160 requires that a noncontrolling interest in a consolidated subsidiary be displayed in the consolidated statement of financial position as a separate component of equity because the FASB concluded that noncontrolling interests meet the definition of equity of the consolidated entity. In addition, net income attributable to the noncontrolling interest will be included in consolidated net income on the face of the income statement.  SFAS 160 is effective for the first annual reporting period on or after December 15, 2008. Earlier adoption is prohibited. The Company does not have any noncontrolling interest as of June 30, 2008.


SYMYX TECHNOLOGIES, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (CONTINUED)


In March 2008, the FASB issued SFAS No. 161 (SFAS 161), Disclosures about Derivative Instruments and Hedging Activities. SFAS 161 is intended to improve financial reporting of derivative instruments and hedging activities by requiring enhanced disclosures to enable financial statement users to better understand the effects of derivatives and hedging on an entity’s financial position, financial performance and cash flows. The provisions of SFAS 161 are effective for interim periods and fiscal years beginning after November 15, 2008. The Company anticipates no impact upon the adoption of SFAS 161 on its condensed consolidated financial statements.

In April 2008, the FASB issued FSP FAS 142-3, Determination of the Useful Life of Intangible Assets (“FAS 142-3”). This guidance is intended to improve the consistency between the useful life of a recognized intangible asset under SFAS No. 142, Goodwill and Other Intangible Assets (“SFAS 142”), and the period of expected cash flows used to measure the fair value of the asset under SFAS 141R when the underlying arrangement includes renewal or extension of terms that would require substantial costs or result in a material modification to the asset upon renewal or extension. Companies estimating the useful life of a recognized intangible asset must now consider their historical experience in renewing or extending similar arrangements or, in the absence of historical experience, must consider assumptions that market participants would use about renewal or extension as adjusted for SFAS 142’s entity-specific factors. FAS 142-3 is effective for the Company beginning January 1, 2009 and will impact future business combinations.

2.      Stock-Based Benefit Plans

The Company has an Employee Stock Purchase Plan (ESPP) that permits eligible employees to purchase Symyx common stock at a discount, but only through payroll deductions, during concurrent 12-month offering periods. Each offering period is divided into two consecutive six-month purchase periods. On the last day of each purchase period, eligible employees can purchase shares under the plan at 85% of the fair market value of Symyx’s common stock on the first day of the offering period or the last day of the purchase period, whichever was lower. The two purchase dates per year under the ESPP are April 30 and October 31. A total of 127,856 and 99,058 shares were purchased during the six months ended June 30, 2008 and 2007, respectively. As of June 30, 2008, there were 1,442,514 shares of common stock available for future purchase under the ESPP.

The Company also has adopted various stock plans that provide for the grant to employees of stock-based awards, including stock options, restricted stock units, and restricted stock. Certain of these plans permit the grant of nonstatutory stock-based awards to outside consultants and members of its Board of Directors. During the three and six months ended June 30, 2008, the Company granted options to purchase 20,000 and 77,500 shares of common stock, respectively, under its stock option plans. No options were granted during the three and six months ended June 30, 2007. During the three and six months ended June 30, 2008, the Company granted 30,240 and 33,422 shares of restricted stock units, respectively. During the three and six months ended June 30, 2007, the Company granted 31,414 and 560,543 shares of restricted stock units, respectively. At the Company’s annual stockholder meeting on June 16, 2008, the Company’s stockholders approved, among other things, a proposal to amend the Company’s 2007 Stock Incentive Plan to increase the total authorized shares available for grant under such plan by 4,700,000 shares and reduce the number of shares available for issuance under the 2007 Plan (i) by one share for each share of common stock subject to a stock option or stock appreciation right; and (ii) by one and sixty-five hundredths (1.65) shares for each share of common stock subject to any other type of award issued under the 2007 Plan. As of June 30, 2008, 6,547,569 shares were available for issuance under the Company’s various stock plans.

The Company valued options granted in the three and six months ended June 30, 2008 using the Black-Scholes method with the following valuation assumptions:


SYMYX TECHNOLOGIES, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (CONTINUED)


   
Three Months Ended June 30, 2008
   
Six Months Ended June 30, 2008
 
   
Range
   
Weighted-Average
   
Range
   
Weighted-Average
 
Expected dividend
 
0
%     0 %  
0
%     0 %
Risk-free interest rate
    2.7% - 2.7 %     2.7 %     2.7% - 3.5 %     3.3 %
Expected volatility
    46% - 47 %     47 %     46% - 47 %     47 %
Expected life (in years)
    4.0 – 5       4.6       4.0 – 5.1       4.7  

 
On June 16, 2008, the Company’s stockholders also approved a voluntary stock option exchange program at the 2008 annual meeting of stockholders. The purpose of the stock option exchange program is to allow eligible employees holding stock options with exercise prices significantly higher than the current trading price of Symyx common stock the opportunity to exchange eligible stock options for new stock options with a lower exercise price but covering fewer shares.  The Company’s directors, executive officers, consultants and non-U.S. employees will not be able to participate. The Company plans to complete the stock option exchange in the third quarter of 2008.
 
The Company recognized stock-based compensation expense of $1,016,000 and $1,141,000 during the three months ended June 30, 2008 and 2007, respectively. The Company recognized stock-based compensation expense of $2,161,000 and $3,581,000 during the six months ended June 30, 2008 and 2007, respectively. Stock-based compensation expense recognized in the Company’s results of operations for these periods was as follows (in thousands):

   
Three Months Ended June 30,
   
Six Months Ended
June 30,
 
   
2008
   
2007
   
2008
   
2007
 
Cost of revenue
  $ 74     $ 18     $ 134     $ 71  
Research and development
    353       661       723       1,602  
Sales, general and administrative
    589       462       1,304       1,908  
Total
  $ 1,016     $ 1,141     $ 2,161     $ 3,581  

3.      Earnings per Share

Basic and diluted net loss per share has been computed by dividing the net loss for the period by the weighted-average number of shares of common stock outstanding during the period. The computation of the weighted-average number of shares outstanding for the three and six months ended June 30, 2008 and 2007 is as follows (in thousands):

   
Three Months Ended June 30,
   
Six Months Ended
June 30,
 
   
2008
   
2007
   
2008
   
2007
 
Weighted-average shares outstanding
    33,720       33,450       33,668       33,332  
Less: weighted-average restricted stock
    --       (134 )     (37 )     (140 )
Weighted-average shares used in computing basic and diluted net loss per share
    33,720       33,316       33,631       33,192  

The following shares were excluded from the calculation of basic and diluted net loss per share for the three and six months ended June 30, 2008 and 2007, respectively, because all were anti-dilutive for the respective periods (in thousands):


SYMYX TECHNOLOGIES, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (CONTINUED)


   
June 30,
 
   
2008
   
2007
 
Options
    6,241       6,430  
Restricted stock units
    158       448  
Restricted stock
    --       91  
Total anti-dilutive shares
    6,399       6,969  

4.      Related Party Transactions

The Company entered into a Collaborative Development and License Agreement with Intermolecular, Inc. (Intermolecular) in March 2005, and an Alliance Agreement in December 2005. Under these agreements, the two companies work together to conduct research and development and other activities with respect to materials and high-throughput technology for use in semiconductor applications. Each party bears its own expenses. These agreements were amended in November 2007. Under the amended agreements, the Company committed to fund an aggregate of $2,057,000 in research and capital equipment expenditures. The Company expects to satisfy the remaining $537,000 of this commitment in 2008. Furthermore, in August 2006, the Company invested $13,500,000 in exchange for approximately 13% of Intermolecular’s outstanding shares. The Company accounts for its ownership interest in Intermolecular using the cost method, because the Company does not have the ability to exercise significant influence over Intermolecular’s strategic, operating, investing and financing activities. Steven D. Goldby, executive chairman of the Company’s Board of Directors, is a director of Intermolecular. For the three months ended June 30, 2008 and 2007, the Company recognized royalty revenue from Intermolecular of $587,000 and $72,000, respectively. For the six months ended June 30, 2008 and 2007, the Company recognized royalty revenue from Intermolecular of $639,000 and $128,000, respectively. As of June 30, 2008 and December 31, 2007, the Company recorded $84,000 of deferred revenue from Intermolecular.

In November 2006, the Company invested $400,000 in cash plus certain intellectual property with no cost basis related to sensor technology in exchange for approximately 38% of the outstanding shares of Visyx Technologies Inc. (Visyx). The Company had a 45% voting right in relation to its shareholding. Isy Goldwasser, the Company’s chief executive officer, is a Visyx board member. During the three and six months ended June 30, 2007, the Company reported a $0 and $214,000 equity loss based on its share of the loss reported by Visyx, in accordance with the equity method of accounting. In November 2007, Visyx sold all its assets to MeasurementSpecialties, Inc. The Company will share in future distributions, if any, subject to certain preferred stock liquidation preferences. The Company does not have any commitments to fund this entity. As of June 30, 2008, the Company had a $0 carrying value of this investment.

5.      Comprehensive Loss

The components of comprehensive loss for the three and six months ended June 30, 2008 and 2007 were as follows (in thousands):
   
Three Months Ended June 30,
   
Six Months Ended
June 30,
 
   
2008
   
2007
   
2008
   
2007
 
Net loss
  $ (1,525 )   $ (1,470 )   $ (8,317 )   $ (2,442 )
Other comprehensive income (loss):
                               
Unrealized gains (losses) on marketable securities, net of tax
    --       35       (1 )     31  
Foreign currency translation adjustment
    (1,988 )     (45 )     2,089       (26 )
Other comprehensive income (loss)
    (1,988 )     (10 )     2,088       5  
Comprehensive loss
  $ (3,513 )   $ (1,480 )   $ (6,229 )   $ (2,437 )


SYMYX TECHNOLOGIES, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (CONTINUED)


6.      Segment Disclosure>

SFAS No. 131 (SFAS 131), Disclosures about Segments of an Enterprise and Related Information, requires disclosures of certain information regarding operating segments, products and services, geographic areas of operation and major customers. The method for determining what information to report under SFAS 131 is based upon the "management approach," or the way that management organizes the operating segments within a company for which separate financial information is available and evaluated regularly by the Chief Operating Decision Maker (CODM) when deciding how to allocate resources and in assessing performance. The Company’s Chief Executive Officer is its CODM. Historically, the CODM allocated resources to and assessed the performance of each business unit using information about the business unit’s revenue.
Revenue is defined as revenue from external customers and is disaggregated into:

 
·
Symyx Research – (i) research services, and (ii) license fees and royalties associated with the Company’s patents, trade secrets and other intellectual property, including materials discovered in the Company’s research collaborations.
 
·
Symyx Tools – (i) sale of laboratory automation systems, and (ii) system support services.
 
·
Symyx Software – (i) license of electronic laboratory notebook, lab execution and experiment analysis, logistics and decision support software, and subscriptions to scientific content, and (ii) provision of associated support, maintenance and consulting services.

Beginning in 2008, the Company reported its revenue from licensing materials and intellectual property in the Symyx Research segment. Prior year presentation has been conformed to this change.

The disaggregated financial information regarding revenue reviewed by the CODM is as follows (in thousands):

   
Three Months Ended June 30, 2008
 
   
Service Revenue
   
Product
Sales
   
License Fees, Content and Royalties
   
Total Revenue
 
Symyx Research
  $ 6,974     $ --     $ 3,056     $ 10,030  
Symyx Tools
    1,528       5,017       --       6,545  
Symyx Software
    11,738       --       12,338       24,076  
Total
  $ 20,240     $ 5,017     $ 15,394     $ 40,651  
 
   
Three Months Ended June 30, 2007
 
   
Service Revenue
   
Product Sales
   
License Fees, Content and Royalties
   
Total Revenue
 
Symyx Research
  $ 9,498     $ --     $ 3,843     $ 13,341  
Symyx Tools
    1,053       5,864       7       6,924  
Symyx Software
    2,903       --       2,389       5,292  
Total
  $ 13,454     $ 5,864     $ 6,239     $ 25,557  

   
Six Months Ended June 30, 2008
 
   
Service Revenue
   
Product
Sales
   
License Fees, Content and Royalties
   
Total Revenue
 
Symyx Research
  $ 14,763     $ --     $ 6,358     $ 21,121  
Symyx Tools
    2,752       9,584       --       12,336  
Symyx Software
    21,240       --       22,861       44,101  
Total
  $ 38,755     $ 9,584     $ 29,219     $ 77,558  
 

SYMYX TECHNOLOGIES, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (CONTINUED)


   
Six Months Ended June 30, 2007
 
   
Service Revenue
   
Product Sales
   
License Fees, Content and Royalties
   
Total Revenue
 
Symyx Research
  $ 19,369     $ --     $ 8,175     $ 27,544  
Symyx Tools
    2,188       10,482       15       12,685  
Symyx Software
    5,470       --       4,825       10,295  
Total
  $ 27,027     $ 10,482     $ 13,015     $ 50,524  


Geographic Area Data

The table below shows revenue by physical location of the Company’s customers based on the ship-to address (in thousands).
 
   
Three Months Ended June 30,
   
Six Months Ended
June 30,
 
   
2008
   
2007
   
2008
   
2007
 
United States
  $ 28,176     $ 22,873     $ 50,568     $ 46,069  
North America (excluding United States)
    167       76       296       164  
Asia
    3,373       589       5,664       785  
Europe, Mid-East and Australia
    8,935       2,019       21,030       3,506  
Total
  $ 40,651     $ 25,557     $ 77,558     $ 50,524  

7.      Intangible Assets>

The Company acquired certain patent rights and know-how from third parties. It also obtained certain intangible assets in various business acquisitions. These intangible assets are being amortized on a straight-line basis over the estimated useful lives of the assets. Because some of the intangible assets related to the Autodose acquisition were recorded in foreign currencies, the balance of these intangible assets may be affected by foreign currency exchange rate fluctuations when converted to U.S. dollars at each reporting period. The estimated weighted-average useful lives and carrying amounts of these intangible assets at June 30, 2008 and December 31, 2007 were as follows (in thousands, except for useful lives):


SYMYX TECHNOLOGIES, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (CONTINUED)


         
June 30, 2008
 
   
Weighted-Average Useful Life
(Years)
   
Gross Carrying Amount
   
Accumulated Amortization
   
Net Carrying Amount
 
Acquired technology
    5.0     $ 3,130     $ (2,735 )   $ 395  
Trade name
    3.4       1,815       (512 )     1,303  
Core/developed technology
    5.7       23,714       (10,464 )     13,250  
Customer relationships
    7.8       40,181       (6,389 )     33,792  
Proprietary content
    6.0       7,800       (975 )     6,825  
License agreements
    3.0       4,400       (1,100 )     3,300  
Bargain lease
    8.0       1,300       (122 )     1,178  
Total intangibles
    6.6     $ 82,340     $ (22,297 )   $ 60,043  

         
December 31, 2007
 
   
Weighted-Average Useful Life
(Years)
   
Gross Carrying Amount
   
Accumulated Amortization
   
Net Carrying Amount
 
Acquired technology
    5.0     $ 3,130     $ (2,591 )   $ 539  
Trade name
    3.4       1,774       (226 )     1,548  
Core/developed technology
    5.7       23,463       (8,200 )     15,263  
Customer relationships
    7.8       40,042       (3,755 )     36,287  
Proprietary content
    6.0       7,800       (325 )     7,475  
License agreements
    3.0       4,400       (366 )     4,034  
Bargain lease
    8.0       1,300       (41 )     1,259  
Total intangibles
    6.6     $ 81,909     $ (15,504 )   $ 66,405  

In the three months ended June 30, 2008 and 2007, the Company recorded amortization expenses of intangible assets of $3,329,000 and $1,033,000, respectively. In the six months ended June 30, 2008 and 2007, the Company recorded amortization expenses of intangible assets of $6,666,000 and $2,064,000, respectively. Assuming no subsequent impairment of the underlying assets, the amortization expense of total intangible assets is expected to be as follows (in thousands):

Years ending December 31,
 
Amount
 
Remainder of 2008
  $ 6,668  
2009
    12,097  
2010
    10,192  
2011
    8,081  
2012
    7,391  
Thereafter
    15,614  
Total
  $ 60,043  
 
SYMYX TECHNOLOGIES, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (CONTINUED)



During the six months ended June 30, 2007, the Company incurred an ordinary loss greater than its anticipated annual ordinary loss. The Company recorded income tax benefits for the six months ended June 30, 2007 up to the limit determined in accordance with FASB Interpretation No. 18, Accounting for Income Taxes for Interim Periods. The reconciliation of the federal statutory income tax rate to the Company’s effective income tax rate is as follows:

   
Six Months Ended June 30,
 
   
2008
   
2007
 
Federal statutory rate
    35 %     35 %
State taxes, net of federal impact
    7 %     12 %
Permanent difference related to stock-based compensation
    (1 %)     (7 %)
Permanent difference related to research credits
    0 %     7 %
Permanent difference related to tax-exempt interest
    *       10 %
Other individually immaterial items
    (2 %)     (1 %)
Effective income tax rate
    39 %     56 %

* Less than 1%.

U.S. income taxes were not provided on undistributed earnings from investments in certain non-U.S. subsidiaries. Determination of the amount of unrecognized deferred tax liability for temporary differences related to investments in these non-U.S. subsidiaries that are essentially permanent in duration is not practicable. The Company intends to reinvest these earnings in operations outside the U.S.

9.   Bank Credit Facility

On September 28, 2007, the Company entered into a Credit Agreement (Credit Agreement) with Bank of America, N.A., as Administrative Agent and L/C Issuer (the “Agent”), and each lender from time to time a party thereto. Under the Credit Agreement, the Agent provided a $25 million aggregate commitment for a two-year revolving credit facility (Facility) and issuances of letters of credit for the Company’s account, secured by substantially all of the Company’s assets, other than intellectual property.

Loans under the Credit Agreement will bear interest at either (i) for Eurodollar rate loans, the rate per annum equal to the British Bankers Association LIBOR plus a margin ranging from 0.25 percent to 0.50 percent or (ii) for U.S. dollar loans, a formula based on the Agent’s prime rate and the federal funds effective rate.  Subject to certain conditions stated in the Credit Agreement, the Company may borrow, pre-pay and re-borrow amounts under the Facility at any time during the term of the Credit Agreement.  The Credit Agreement will terminate and all amounts owing thereunder will be due and payable on September 28, 2009, unless the commitments are earlier terminated, either at the Company’s request or, if an event of default occurs, by the lenders. The Company may also, upon the agreement of either the Agent or additional banks not currently a party to the Credit Agreement, increase the commitments under the Facility up to an additional $50 million. The Credit Agreement contains customary representations, warranties, affirmative and negative covenants, including financial covenants and events of default.  The negative covenants set forth in the Credit Agreement include restrictions on additional indebtedness and liens, fundamental changes and entering into burdensome agreements. The financial covenants require the Company to meet quarterly financial tests with respect to consolidated net worth and consolidated interest coverage ratio, and financial tests with respect to a consolidated leverage ratio. As of June 30, 2008, the Company had no outstanding borrowings under the Facility and was in compliance with all financial covenants related to the Facility.

10.   Business Combination
 
On October 1, 2007, the Company acquired MDL Information Systems, Inc. (MDL) for $123,000,000 in cash. Of the cash paid, the Company and the seller placed $10,000,000 in escrow pending their determination of any detriments suffered or benefits enjoyed by MDL as a result of certain pre-closing intercompany transactions. The escrow account was subsequently reduced to $1,735,000 after a March 2008 net working capital adjustment payment of $4,954,000 to the Company,  and June 2008 distributions of $1,626,000 to the Company for withholding tax and professional fee reimbursement and $1,735,000 to the seller. The remaining amount in the escrow account will be settled by June 2009.


SYMYX TECHNOLOGIES, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (CONTINUED)


The total preliminary purchase price for this acquisition was $121,474,000, consisting of approximately $118,046,000 in cash ($123,000,000 cash paid, net of $4,954,000 working capital adjustments received), and $3,428,000 in transaction costs, consisting of legal and other professional service fees (net of $325,000 reimbursement of transaction costs from the escrow account received in June 2008). During the six months ended June 30, 2008, the change in restructuring charges associated with the MDL acquisition and additional legal and other professional service fees net of the $325,000 reimbursement mentioned above resulted in a net decrease of goodwill of $262,000.

The purchase price was preliminary primarily because the parties had not determined the final amount to be released to the seller from the escrow account.

11.   Restructuring Charges

On October 2, 2007, in connection with the MDL acquisition, the Company announced a restructuring plan to terminate approximately 120 Company employees, comprised of approximately 100 positions in the United States and approximately 20 positions internationally. Total estimated restructuring termination benefits were $7,040,000, consisting primarily of involuntary employee termination benefits. Of the total restructuring charges, $6,823,000 was associated with former MDL employees and therefore was accrued as part of the liabilities assumed at the time of MDL acquisition according to FASB Statement No. 141, Accounting for Business Combinations, as well as EITF Consensus No. 95-3, Recognition of Liabilities in Connection with a Purchase Business Combination. The remaining balance, which was associated with the termination of employees of the acquiring company, was recorded as part of the Company’s operating expenses according to FASB Statement No. 146, Accounting for Costs Associated with Exit or Disposal Activities. As of June 30, 2008, the Company had completed the majority of the restructuring plan. Estimated costs to complete the restructuring plan in the amount of $632,000 are expected to be paid out in the remainder of 2008. The following table illustrated the change in accrued restructuring costs during the six months ended June 30, 2008 (in thousands):

   
2008
 
Balance as of January 1, 2008
  $ 2,275  
New charges accrued during the period
    297  
Payments made during the period
    (1,568 )
Adjustments to liabilities during the period, including foreign currency exchange rate effect
    (372 )
Balance as of June 30, 2008
  $ 632  

12.   Subsequent Event

On July 23, 2008, the Company received an additional payment of $4,778,000 from the sale of Ilypsa, Inc., representing the Company’s portion of the 10% holdback in the original transaction the buyer retained as security against certain representations, warranties and covenants contained in the acquisition agreements.
 
ITEM 2. MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS

Cautionary Statements

This Quarterly Report on Form 10-Q (”Report”) contains forward-looking statements within the meaning of Section 27A of the Securities Act of 1933 and Section 21E of the Securities Exchange Act of 1934, as amended, (the “Exchange Act”), including statements regarding our expectations, objectives, anticipations, plans, hopes, beliefs, intentions or strategies regarding the future. Typically, words such as “may,” “will,” “should,” “could,” “expect,” “plan,” “anticipate,” “believe,” “estimate,” “predict,” “intend,” “potential,” “continue” or the negative of these terms or other comparable terminology are used to identify these forward-looking statements. These forward-looking statements are inherently subject to risks and uncertainties, some of which cannot be predicted or quantified. These statements appear throughout this Report and are statements regarding the Company’s current expectation, belief or intent, primarily with respect to its operations and related industry developments.  There can be no assurance that these statements will prove to be correct.
 
You should not place undue reliance on these forward-looking statements. A variety of factors could cause actual results and experience to differ materially from the anticipated results or other expectations expressed in such forward-looking statements. Among the factors that could cause actual results to differ materially are the factors detailed in Part II, Item 1A of this Report under the heading “Risk Factors.” All forward-looking statements speak as of the date on which they were made, based on information available to the Company at such date. The Company assumes no obligation to update any forward-looking statement to reflect events or circumstances after the date on which the statement is made or to reflect the occurrence of unanticipated events.  New factors emerge from time to time, and it is not possible for the Company to predict which factors will arise.  In addition, the Company cannot assess the impact of each factor on our business or the extent to which any factor, or combination of factors, may cause actual results to differ materially from those contained in any forward-looking statements.

The following discussion and analysis should be read in conjunction with the condensed consolidated financial statements and the notes thereto included in this Report and the audited consolidated financial statements and accompanying notes included in our Annual Report on Form 10-K for the year ended December 31, 2007, filed with the SEC on March 17, 2008 (SEC File No. 000-27765).

All percentage amounts and ratios were calculated using the underlying data in thousands. Operating results for the three and six months ended June 30, 2008 are not necessarily indicative of the results that may be expected for any subsequent quarter or for the full fiscal year.

Overview

Symyx Technologies, Inc. (Symyx or the Company) is a scientific research and development (R&D) integration partner to leading companies in the life sciences, chemical, energy, consumer products and electronics industries. With scientific R&D under tremendous economic and technical pressure, we help companies reduce R&D risk and enhance R&D productivity and enable them to bring more and better products to market quickly and cost-effectively. Our technology platform combines Symyx Software (which includes electronic lab notebooks, lab execution and analysis, logistics and decision support software, and scientific content), Symyx Tools (which includes modular and integrated workflows that can be enhanced by Symyx Software) and Symyx Research (which includes collaborative research and directed services) to support the R&D process.

We work with customers through our Symyx Software, Symyx Tools and Symyx Research businesses. With Symyx Software, we help address customer needs for greater data access and integration across the enterprise, improving their ability to search, manage, manipulate and store internal and external research data as well as to manage their intellectual property. On October 1, 2007, we acquired MDL Information Systems, Inc. (MDL), a leading provider of innovative informatics software, databases and services that accelerate successful scientific R&D by improving the speed and quality of scientists’ decision making. With this acquisition, Symyx Software became the largest of our three business segments.

Our Symyx Tools and Symyx Research products provide different ways for customers to access our proprietary high-throughput technologies for parallel (versus serial) experimentation, enabling greater speed and breadth of research. We develop and apply high-throughput technologies that enable our customers to engage in faster and broader experimentation by working with small amounts of materials in an automated fashion and utilizing parallel or array-based testing.  Our Symyx Tools products enable customers to bring some of our laboratory capabilities into their own organizations by purchasing instruments that integrate and automate laboratory experimentation, resulting in increased research productivity. Customers leverage our expertise and infrastructure through our Symyx Research offerings, with programs that range from directed research to strategic collaborative relationships. A portion of our resident expertise and resources within Symyx Research is also allocated toward the development of intellectual property assets where we partner with a strategic or financial investor to develop materials science solutions in areas where we have expertise.


Through software licensing, automated workflow sales and research services, we provide customers multiple ways to begin working with us. Our goal is to leverage and integrate all of our offerings so that, over time, our customers can easily access our entire technology platform to improve their R&D productivity and reduce program risk.

We generate revenue and cash flows from operations from the following activities:

 
·
licenses of Symyx Software;
 
·
subscriptions to certain scientific content;
 
·
software services and support;
 
·
sales and support of Symyx Tools;
 
·
research services; and
 
·
licenses of our discovered materials and intellectual property.

Highlights for the quarter ended June 30, 2008 include:

 
·
At $40.7 million, revenue for the quarter was at a record high for our second fiscal quarter, up 59% over the same quarter of 2007, driven by significant growth in Symyx Software, primarily as a result of our acquisition of MDL, which offsets a 25% period-to-period decline in Symyx Research revenue and a slightly lower quarter for Symyx Tools.
 
 
·
We ended the quarter with cash and cash equivalents totaling $88.2 million, a significant increase over our total cash, cash equivalents and marketable securities of $45.5 million at December 31, 2007.
 
 
·
Our net loss per share was $0.05 for the quarter, a substantial improvement over our $0.20 loss per share in the first quarter of 2008 due to higher revenue, proceeds from divesting the assets of a non-core MDL business operation, reduced expenses from recruiting and consulting expenses and reduced stock-based compensation expenses.

 
·
We continued to see sequential improvement in our renewal rates for recurring revenue in Symyx Software.

Our net loss for the six months ended June 30, 2008 was $8.3 million, compared to a net loss of $2.4 million for the six months ended June 30, 2007. The increase in net loss was due primarily to significantly higher expenses related to amortization of intangible assets arising from business combinations, which increased from $1.9 million in the six months ended June 30, 2007 to $6.5 million in the six months ended June 30, 2008 due to our acquisition of MDL in October 2007. We have also significantly increased our investments in sales and marketing in 2008.


Stock-based compensation expense recognized in our results of operations for the three and six month periods ended June 30, 2008 was as follows (in thousands):

   
Three Months Ended June 30,
   
Six Months Ended
June 30,
 
   
2008
   
2007
   
2008
   
2007
 
Cost of revenue
  $ 74     $ 18     $ 134     $ 71  
Research and development
    353       661       723       1,602  
Sales, general and administrative
    589       462       1,304       1,908  
Total
  $ 1,016     $ 1,141     $ 2,161     $ 3,581  

 
On June 16, 2008, our stockholders approved a voluntary stock option exchange program at the 2008 annual meeting of stockholders. The purpose of the stock option exchange program is to allow eligible employees holding stock options with exercise prices significantly higher than the current trading price of our common stock the opportunity to exchange eligible stock options for new stock options with a lower exercise price but covering fewer shares.  Our directors, executive officers, consultants and non-U.S. employees will not be able to participate. We plan to complete the stock option exchange in the third quarter of 2008. The incremental stock-based compensation resulted from this program will be amortized on a straight-line basis over the vesting period of the replacement options.
 
Critical Accounting Policies and Use of Estimates

We prepare our financial statements and accompanying notes in accordance with generally accepted accounting principles in the United States. Preparing financial statements and related disclosures requires management to exercise judgment in making estimates and assumptions that affect the reported amounts of assets, liabilities, revenue and expenses. These estimates and assumptions are affected by management’s application of accounting policies. Estimates include the forfeiture rates for stock-based awards, future warranty expenditures and product life cycles; assumptions such as the elements comprising a revenue arrangement, including the distinction between software upgrades/enhancements and new products, when our products achieve technological feasibility, and the potential outcome of future tax consequences of events recognized in the our financial statements or tax returns. We evaluate our estimates, including those mentioned above, on an ongoing basis. We base our estimates on historical experience and on various other assumptions that we believe to be reasonable under the circumstances, the results of which form our basis for making judgments about the carrying value of assets and liabilities that are not readily apparent from other sources.  Actual results may differ from those estimates under different assumptions or conditions.  Our critical accounting policies and estimates are discussed in detail in our Annual Report on Form 10-K for the fiscal year ended December 31, 2007. We have not materially changed these policies except for the accounting policy related to foreign currency translations as noted below.

Foreign Currency Translation

We account for foreign currency translation in accordance with Statement of Financial Accounting Standard No. 52, Foreign Currency Translation, as amended. We translate the assets and liabilities of our international non-U.S. dollar functional currency subsidiaries into dollars at the rates of exchange in effect at the balance sheet date. Revenue and expenses are translated using rates that approximate those in effect during the period. Translation adjustments are included in stockholders’ equity in the Consolidated Balance Sheet caption “Accumulated other comprehensive income.” Currency transaction gains  derived from monetary assets and liabilities stated in a currency other than the functional currency and recognized in results of operations were $960,000 and $29,000 for the three-month periods ended June 30, 2008 and 2007, respectively, and $338,000 and $5,000 for the six-month periods ended June 30, 2008 and 2007, respectively. The effect of foreign currency rate changes on cash and cash equivalents was a decrease of $435,000 and $498,000 as of June 30, 2008 and December 31, 2007.

Results of Operations

Revenue

   
Three Months Ended June 30,
       
   
2008
   
2007
   
Change
 
   
(in thousands, except percentages)
 
                         
Service
  $ 20,240     $ 13,454     $ 6,786       50 %
Product Sales
    5,017       5,864       (847 )     (14 )%
License fees, content and royalties
    15,394       6,239       9,155       147 %
Total revenue
  $ 40,651     $ 25,557     $ 15,094       59 %

   
Six Months Ended June 30,
       
   
2008
   
2007
   
Change
 
   
(in thousands, except percentages)
 
                         
Service
  $ 38,755     $ 27,027     $ 11,728       43 %
Product Sales
    9,584       10,482       (898 )     (9 )%
License fees, content and royalties
    29,219       13,015       16,204       125 %
Total revenue
  $ 77,558     $ 50,524     $ 27,034       54 %


The predominant driver of our revenue increase in the three and six months ended June 30, 2008 over the same periods of 2007 was increased content revenue and software license, consulting and maintenance revenue in our Symyx Software business segment as a result of the MDL acquisition.

Concentration of Revenue

ExxonMobil and The Dow Chemical Company (Dow) are the only two major customers that contributed more than 10% of our quarterly revenue, accounting for $6.2 million and $6.6 million of total revenue, respectively, for the three months ended June 30, 2008, and for $8.6 million and $7.0 million of total revenue, respectively, for the same period in 2007. ExxonMobil and Dow accounted for $13.9 million and $12.5 million of total revenue, respectively, for the six months ended June 30, 2008, and for $19.6 million and $12.5 million of total revenue, respectively, for the same period in 2007. We expect a significant portion of our total revenue will continue to be generated from a few key customers in fiscal 2008. However, with the MDL acquisition in October 2007, we have significantly reduced the concentration of our revenue.
 
The revenue, and corresponding percent of revenue by each revenue component, from ExxonMobil and Dow is as follows (in thousands, except percentages):

   
Three Months Ended June 30,
 
   
2008
   
2007
 
Service
  $ 7,357       36 %   $ 8,940       66 %
Product sales
    1,847       37 %     1,798       31 %
License fees, content and royalties
    3,662       24 %     4,851       78 %
Total
  $ 12,866       32 %   $ 15,589       61 %

   
Six Months Ended June 30,
 
   
2008
   
2007
 
Service
  $ 14,510       37 %   $ 18,220       67 %
Product sales
    2,949       31 %     4,133       39 %
License fees, content and royalties
    8,950       31 %     9,736       75 %
Total
  $ 26,409       34 %   $ 32,089       64 %
 

Revenue by Segment

We segregate revenue into the following business units (in thousands, except percentages):

   
Three Months Ended June 30,
 
   
2008
   
Change over Previous Year
   
2007
 
                   
Symyx Research
  $ 10,030       (25 %)   $ 13,341  
Symyx Tools
    6,545       (5 %)     6,924  
Symyx Software
    24,076       355 %     5,292  
Total
  $ 40,651       59 %   $ 25,557  
       
   
Six Months Ended June 30,
 
   
2008
   
Change over Previous Year
   
2007
 
                         
Symyx Research
  $ 21,121       (23 %)   $ 27,544  
Symyx Tools
    12,336       (3 %)     12,685  
Symyx Software
    44,101       328 %     10,295  
Total
  $ 77,558       54 %   $ 50,524  

The Symyx Research segment generates revenue primarily from providing directed and collaborative research services, and from licensing materials and intellectual property. The decrease in Symyx Research revenue for the three and six months ended June 31, 2008 from the same periods in 2007 resulted primarily from reduced collaboration research revenue from ExxonMobil and, to a lesser degree, Dow. The collaborative research component of our alliance with ExxonMobil terminated on May 31, 2008. In January 2008, we entered into a Research and License Agreement with ExxonMobil which partially replaces or extends certain projects. However, with the net decline in Symyx Research revenue from ExxonMobil, we expect research revenue from ExxonMobil and Dow to decline up to 50% in the second half of 2008 as compared to the first half of 2008. Symyx Research has launched initiatives in the chemical, energy and life science industries, and is actively seeking partnerships or new ventures, and negotiating a potential new venture in these areas intended to offset some, or all, of this decline, but we can provide no assurances these initiatives will be successful. If they are not successful, our financial condition and results of operations will be materially and adversely affected.
 
The Symyx Tools segment generates revenue primarily from the sale and support of our Symyx Tools systems. We sold the same number of Symyx Tools systems in the three and six months ended June 30, 2008 we sold in the corresponding periods in 2007. Symyx Tools revenue decreased in the three and six months ended June 30, 2008 from the comparative periods in 2007 due to the lower average Symyx Tools value in the period, partially offset by increased Symyx Tools service revenue.

Beginning in the second half of 2007, we significantly increased our investments in sales and marketing in an effort to broaden our sales opportunities for all of our business units. While we have successfully expanded our pipeline of opportunities for Symyx Tools, we cannot yet predict with accuracy the sales cycles or the success rates we can expect in this business segment. We generally expect that our Symyx Tools service revenue will grow along with growth of our Symyx Tools installed base.

The Symyx Software segment generates revenue primarily from the licensing of software, including the Isentris platform and our Laboratory Execution and Analysis (LEA) and Electronic Laboratory Notebook (ELN) products, content subscriptions, and providing associated support, maintenance and consulting services. Symyx Software revenue increased 355% and 328% in the three and six months ended June 30, 2008, respectively, when compared with the same periods in 2007. We attributed the majority of the $18.8 million and $33.8 million increase in Symyx Software revenue for the three and six months ended June 30, 2008, respectively, to products we acquired through the MDL acquisition and related services. We expect Symyx Software revenue to continue to increase for the remainder of 2008 as compared to comparable periods in 2007.


Cost of Revenue

The MDL acquisition significantly increased our software consulting and maintenance revenue and the costs associated with these revenue streams. Starting in the fourth quarter of 2007, we reclassified certain operating expenses related to software consulting and software and hardware maintenance as a cost of service. We also reclassified to costs of revenue certain operating expenses and amortization of intangible assets arising from business combinations that were related to software licensed or product sold. Costs associated with providing collaborative research services are included with research and development expenses and are not included as a cost of revenue.

The increase of $4.6 million and $10.8 million, respectively, in cost of revenue for the three and six month periods ended June 30, 2008 compared to the same periods ended June 30, 2007 was primarily due to costs associated with the increased software revenue driven by the MDL acquisition.

The cost of products sold is driven by product mix and sales volume in each period. We expect the cost of products sold as a percentage of product sales to fluctuate from period to period because the majority of Symyx Tools are built to order or to particular specifications. For systems that include a significant development component prior to their commercial build, or systems delivered to customers as prototypes, we expense development costs incurred prior to the commercial build, which results in a lower cost of products sold and higher margin in the quarter in which we deliver such a system to the customer.

Cost of products sold was approximately $2.1 million, or 42% of product sales revenue for the three months ended June 30, 2008, compared to $3.2 million, or 55% of product sales revenue for the same period in 2007. Cost of products sold was approximately $4.3 million, or 45% of product sales revenue for the six months ended June 30, 2008, compared to $4.9 million, or 47% of product sales revenue for the same period in 2007. The decrease in the cost of products sold as a percentage of product sales revenue was primarily due to the change of product mix and partially due to cost reduction from volume discount and standardizing certain manufacturing processes. Certain tools sold in 2007 also had a higher degree of third-party components, which typically causes our margins to be lower on these systems.


Other Operating Expenses
   
Three Months Ended June 30,
 
   
2008
         
2007
 
   
Amount
( in 000’s)
   
As a Percentage of Total Revenue
   
Change over Previous Year
   
Amount
( in 000’s)
   
As a Percentage of Total Revenue
 
Research and development
  $ 19,729       48 %     36 %   $ 14,529       57 %
Sales, general and administrative
    14,288       35 %     51 %     9,488       37 %
Amortization of intangible assets arising from business combinations
    1,479       4 %     473 %     258       1 %
Total operating expenses
  $ 35,496       87 %     46 %   $ 24,275       95 %
       
   
Six Months Ended June 30,
 
   
2008
           
2007
 
   
Amount
( in 000’s)
   
As a Percentage of Total Revenue
   
Change over Previous Year
   
Amount
( in 000’s)
   
As a Percentage of Total Revenue
 
Research and development
  $ 40,416       52 %     35 %   $ 29,942       59 %
Sales, general and administrative
    29,521       38 %     55 %     19,105       38 %
Amortization of intangible assets arising from business combinations
    2,956       4 %     470 %     519       1 %
Total operating expenses
  $ 72,893       94 %     47 %   $ 49,566       98 %

Research and Development (“R&D”) Expenses

Our R&D expenses consist primarily of:
 
 
salaries and other personnel-related expenses;
 
 
 
facilities costs;
 
 
supplies; and
 
 
depreciation of owned facilities and laboratory equipment.

Total R&D expenses for the three and six months ended June 30, 2008 increased from the same periods in 2007 due to an increase in salaries and other personnel-related expenses for the additional headcount added as a result of the MDL acquisition, partially offset by lower stock-based compensation.

The innovations and advances generated by our research laboratories support our Symyx Research services, Symyx Tools and Symyx Software operations, and generate intellectual property and discovered materials. We believe our market opportunity is significant and that continued investment across our business segments is necessary for long-term success. Accordingly, we expect to continue to devote significant resources to R&D. However, we would expect our R&D expenses to grow at a lesser percentage rate than revenue as our businesses scale.

We do not track fully burdened R&D costs or capital expenditures by project. However, based on hours spent on each project, we estimate the R&D efforts undertaken for various projects were as follows:

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Three Months Ended June 30,
   
Six Months Ended
June 30,
 
   
2008
   
2007